genome.fa.s344.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold344
Parameters: 2 7 7 80 10 50 1000
Length:  1758742

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  11  of  11  ( 1257 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1677759--1677938	79	2.2	81	85	4	240	25	25	17	31	1.97
1677918--1678078	79	2.0	79	82	7	193	29	27	13	30	1.94
1678033--1678129	51	1.9	51	87	4	142	35	23	4	37	1.74
1678061--1678297	121	2.0	122	85	2	325	29	25	11	32	1.91
1680415--1680439	4	6.2	4	100	0	50	24	0	0	76	0.80
1687847--1688092	55	4.4	55	81	8	296	28	26	20	25	1.99
1688113--1688426	56	5.5	55	80	9	331	28	27	20	23	1.99
1688115--1688426	117	2.7	112	82	7	333	28	27	19	24	1.99
1688134--1688477	61	5.8	60	81	9	318	27	26	19	26	1.99
1688113--1688426	172	1.8	173	84	4	438	28	27	20	23	1.99
1688201--1688426	111	2.0	116	84	6	302	28	28	20	22	1.99
1688459--1688623	42	3.8	42	74	15	131	21	25	14	38	1.91
1688501--1688679	46	4.0	46	79	7	163	19	26	13	40	1.88
1688503--1688812	46	7.3	43	71	14	157	21	25	13	40	1.89
1689379--1689555	20	8.8	20	71	20	120	27	16	14	41	1.87
1689418--1689442	13	1.9	13	100	0	50	32	8	16	44	1.76
1691891--1692023	52	2.6	51	78	2	149	30	22	11	35	1.89
1692012--1692083	28	2.6	26	86	8	99	25	33	16	25	1.96
1692226--1692299	28	2.7	28	82	2	96	21	31	22	24	1.99
1691997--1692299	109	2.8	108	84	3	403	25	26	16	32	1.96
1691963--1692306	107	3.2	106	81	3	391	26	25	14	33	1.95
1691963--1692378	107	3.9	108	77	5	380	26	27	14	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1692258--1692412	79	2.0	79	93	0	265	29	29	11	29	1.92
1692362--1692479	51	2.3	50	82	2	164	30	27	11	30	1.91
1693694--1693728	16	2.2	16	89	0	52	25	17	14	42	1.86
1695218--1695349	67	2.0	67	98	0	255	28	15	15	40	1.88
1695424--1695549	38	3.4	37	80	5	119	32	15	2	50	1.57
1695464--1695559	37	2.6	37	78	8	95	37	15	1	45	1.53
1696699--1696724	11	2.4	11	100	0	52	69	0	0	30	0.89
1696966--1696993	5	5.6	5	100	0	56	82	0	17	0	0.68
1701900--1701940	21	2.0	20	95	4	73	4	7	9	78	1.10
1707248--1707273	13	2.0	13	100	0	52	30	15	15	38	1.88
1713319--1713355	13	2.8	13	91	4	56	35	5	13	45	1.66
1713486--1713511	13	2.0	13	100	0	52	30	15	15	38	1.88
1716001--1716052	20	2.6	20	96	0	95	30	11	17	40	1.85
1716020--1716235	91	2.4	91	94	1	380	34	16	16	32	1.92
1717327--1719018	844	2.0	844	98	0	3285	38	10	17	33	1.83
1723508--1723532	13	1.9	13	100	0	50	36	16	16	32	1.90
1723595--1723652	13	4.9	13	72	23	65	29	17	15	37	1.90
1723607--1723672	20	3.7	20	73	26	83	27	18	15	39	1.90
1723595--1723673	33	2.4	33	100	0	158	27	17	15	39	1.90
1723682--1723726	22	2.0	22	95	0	81	28	20	17	33	1.95
1729975--1730028	26	2.3	22	72	22	54	57	11	11	20	1.63
1730821--1730854	17	2.0	17	94	0	59	44	11	8	35	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1740363--1740396	2	17.0	2	100	0	68	50	0	0	50	1.00
1740913--1740977	29	2.2	29	78	13	71	64	0	1	33	1.03
1743235--1743340	32	3.4	31	68	15	92	32	16	20	31	1.94
1743267--1743370	30	3.4	30	67	15	86	35	18	19	26	1.95
1743232--1743403	62	2.8	62	90	0	263	35	16	18	30	1.92
1743379--1743404	13	2.0	13	100	0	52	30	15	15	38	1.88
1743443--1743537	20	4.8	19	82	7	109	27	18	14	38	1.90
1745836--1746008	51	3.4	51	82	6	208	27	26	12	33	1.93
1745940--1746212	79	3.5	78	83	7	351	27	24	14	33	1.94
1746271--1746345	28	2.7	28	83	4	89	28	30	16	25	1.96
1746333--1746447	51	2.3	51	83	6	151	29	26	11	32	1.91
1746299--1746606	130	2.4	130	78	7	322	27	26	13	32	1.94
1746142--1746472	158	2.1	158	80	3	355	29	25	12	31	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11

The End!