genome.fa.s344.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold344
Parameters: 2 7 7 80 10 50 1000
Length:  1758742

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  4  of  11  ( 1257 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
582580--582629	12	3.9	13	76	19	52	40	6	10	44	1.63
582581--582632	27	2.0	26	96	3	95	40	3	11	44	1.59
582691--582723	9	3.7	9	95	0	57	45	18	33	3	1.65
583426--583455	13	2.2	14	94	5	53	53	20	6	20	1.67
583468--583505	15	2.4	16	86	8	60	44	10	15	28	1.80
583771--583800	15	2.0	15	100	0	60	26	33	6	33	1.83
586656--586722	21	3.1	21	80	2	71	35	4	23	35	1.76
593747--594060	157	2.0	157	99	0	619	30	22	17	29	1.97
600011--600061	23	2.2	24	82	3	59	41	1	0	56	1.10
600711--600735	2	12.5	2	100	0	50	48	0	0	52	1.00
614050--614088	19	2.1	19	90	4	62	48	0	2	48	1.15
614050--614101	19	2.8	18	85	5	59	50	0	1	48	1.12
613881--614150	148	1.9	140	84	10	357	41	5	0	51	1.31
614027--614328	164	1.8	161	83	10	396	42	3	2	50	1.35
614568--614608	18	2.3	19	79	12	50	36	2	0	60	1.10
615787--615812	5	5.2	5	100	0	52	0	38	0	61	0.96
616700--616741	16	2.6	16	84	0	57	16	14	19	50	1.79
616869--616942	16	5.0	15	70	23	50	35	0	2	62	1.10
616910--616966	18	3.0	19	82	12	64	43	0	1	54	1.10
617869--617912	22	2.0	22	91	8	72	40	2	9	47	1.48
618279--618331	22	2.3	22	83	9	61	58	1	1	37	1.20
618296--618337	22	1.9	22	85	0	57	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
618831--618868	13	2.9	13	84	11	51	31	5	0	63	1.17
618813--618860	11	4.7	10	80	12	53	33	2	0	64	1.05
619294--619319	2	13.0	2	100	0	52	50	0	0	50	1.00
621014--621055	15	2.7	16	89	10	61	40	0	7	52	1.29
621934--622003	16	4.4	15	75	8	59	31	17	8	42	1.79
621923--622037	48	2.4	49	81	7	137	29	13	10	46	1.76
622336--622371	16	2.3	16	85	4	56	63	2	0	33	1.08
623793--623821	5	5.8	5	100	0	58	82	0	17	0	0.66
626226--626280	12	4.8	12	77	8	53	27	0	5	67	1.12
626327--626404	7	11.0	7	78	6	77	64	1	3	30	1.20
626334--626409	34	2.2	33	81	9	82	64	1	3	30	1.20
626328--626402	15	4.7	15	73	25	64	65	1	4	29	1.19
626560--626614	12	4.2	13	77	11	51	36	0	0	63	0.95
626553--626595	20	2.2	20	86	0	59	27	0	0	72	0.85
626706--626749	16	3.2	13	80	20	54	27	4	0	68	1.09
632152--632210	29	2.0	30	87	9	86	37	3	0	59	1.14
636368--636399	2	16.0	2	100	0	64	50	0	0	50	1.00
636521--636554	3	11.3	3	93	0	59	35	2	0	61	1.11
636800--636919	6	19.8	6	68	19	54	33	2	1	62	1.18
636808--636886	27	2.9	28	80	16	85	34	1	0	64	1.02
637241--637273	17	1.9	17	88	11	50	78	0	18	3	0.87
637305--637381	33	2.4	33	77	12	79	32	1	1	64	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
637892--637955	23	2.8	23	77	17	78	28	3	3	65	1.23
638194--638249	18	3.4	17	72	20	55	44	0	0	55	0.99
638376--638433	24	2.3	25	80	11	66	46	0	0	53	1.00
638759--638792	2	17.5	2	87	6	52	52	0	2	44	1.16
638826--638870	20	2.2	20	88	0	63	44	8	2	44	1.47
639095--639126	7	4.7	7	96	3	57	37	0	0	62	0.95
639724--639759	18	1.9	18	94	5	63	44	0	0	55	0.99
639768--639831	35	1.9	33	81	15	78	59	4	4	31	1.38
647278--647481	79	2.6	78	81	4	214	27	17	30	24	1.97
647436--647512	28	2.8	28	85	0	91	22	19	35	23	1.96
647498--647638	52	2.6	53	75	16	155	31	9	25	33	1.87
647495--647672	52	3.4	49	76	14	151	32	10	26	30	1.90
647590--647718	51	2.5	52	86	3	163	34	13	24	27	1.92
647702--647776	27	2.7	28	89	2	107	21	20	34	24	1.96
650225--650281	21	2.8	21	91	2	89	45	12	17	24	1.83
651944--651986	2	22.0	2	95	4	79	51	0	0	48	1.00
658686--658716	13	2.4	13	94	0	53	35	12	16	35	1.87
658666--658732	33	2.0	33	88	11	102	32	17	13	35	1.89
658782--658808	13	2.1	13	100	0	54	40	14	14	29	1.86
661282--661307	13	2.0	13	100	0	52	38	15	15	30	1.88
661259--661326	33	2.1	33	94	0	118	35	11	19	33	1.88
665186--665226	21	2.0	21	85	9	57	26	14	4	53	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
667439--667491	20	2.7	20	88	11	74	30	18	13	37	1.89
667519--667575	19	2.9	20	86	5	80	38	15	10	35	1.82
671418--671465	25	1.9	25	82	0	60	66	4	2	27	1.21
672465--672504	20	2.0	20	90	0	62	0	15	0	85	0.61
672473--672510	12	3.0	12	92	7	58	2	10	0	86	0.66
674624--674676	27	2.0	27	85	7	72	58	0	3	37	1.16
675680--675741	28	2.3	28	81	15	69	46	0	0	53	1.00
675684--675741	20	2.9	19	84	5	62	48	0	0	51	1.00
675672--675733	26	2.4	27	76	12	67	46	0	0	53	1.00
675678--675740	19	3.4	18	73	20	58	47	0	0	52	1.00
675698--675754	27	2.2	26	81	6	71	47	1	0	50	1.11
675680--675758	26	2.9	28	76	16	69	48	1	0	50	1.08
682187--682221	12	2.9	12	86	0	52	48	42	0	8	1.33
683213--683259	3	15.3	3	95	4	85	65	0	0	34	0.93
683352--683401	17	3.1	16	72	16	50	52	0	2	46	1.12
690643--690678	18	2.0	18	94	0	63	36	5	22	36	1.78
698514--698542	13	2.1	14	93	6	51	44	0	0	55	0.99
698528--698576	21	2.2	21	80	16	55	51	2	2	44	1.24
701007--701040	13	2.5	14	85	9	52	52	5	0	41	1.25
702772--704281	305	5.0	300	96	1	2717	28	13	14	42	1.84
702772--704281	300	5.0	299	95	2	2722	28	13	14	42	1.84
706038--706062	11	2.3	11	100	0	50	68	0	16	16	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
706649--706685	17	2.2	17	95	4	67	29	0	0	70	0.88
707809--707869	31	2.0	31	86	0	86	39	3	1	55	1.26
708890--708946	12	4.5	12	75	18	53	57	0	1	40	1.09
708930--709001	27	2.6	28	82	6	85	58	0	0	41	0.98
709013--709051	20	2.0	20	90	5	62	38	0	0	61	0.96
709072--709141	23	3.0	23	75	8	63	54	2	2	40	1.30
709676--709701	2	13.0	2	100	0	52	50	0	0	50	1.00
710151--710215	19	3.2	19	76	20	53	52	0	0	47	1.00
710161--710215	21	2.5	22	77	14	69	49	0	0	50	1.00
710163--710291	43	3.0	43	70	16	106	51	0	0	46	1.11
710194--710278	16	5.2	16	72	18	50	52	1	1	44	1.16
710227--710296	19	3.6	19	68	24	56	55	0	1	42	1.08
710804--710853	22	2.2	22	82	10	57	46	2	0	52	1.12
721429--721459	3	10.3	3	100	0	62	32	0	0	67	0.91
721947--721989	23	1.9	23	90	4	70	44	6	0	48	1.29
723333--723397	13	4.8	13	75	14	60	63	1	0	35	1.04
724023--724071	21	2.3	21	82	3	62	53	2	0	44	1.12
724711--725424	371	1.9	371	98	0	1374	42	8	10	38	1.68
742804--742953	34	4.4	34	89	0	230	25	8	27	38	1.85
743255--743317	19	3.3	19	90	0	90	28	17	19	34	1.94
747383--747518	33	4.5	32	72	19	105	27	6	25	39	1.81
749392--749417	3	8.7	3	100	0	52	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
751078--751116	13	3.0	13	88	0	51	35	12	15	35	1.86
760356--760488	49	2.7	49	94	2	232	33	18	29	18	1.95
760631--760782	31	4.8	31	85	4	133	22	20	27	29	1.98
760637--761117	28	16.2	31	78	9	234	22	17	28	31	1.96
760668--760834	65	2.6	63	85	3	208	19	17	31	31	1.95
761019--762193	27	42.7	27	83	4	922	30	14	29	25	1.95
761019--762193	82	14.2	81	79	6	871	30	14	29	25	1.95
760821--762152	109	12.1	113	78	7	591	29	15	29	26	1.96
760726--761907	28	42.1	28	81	5	510	27	15	29	27	1.96
763497--763576	22	3.5	22	72	14	65	10	10	8	71	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11