genome.fa.s369.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold369
Parameters: 2 7 7 80 10 50 1000
Length:  1106593

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 689 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
912820--913133	136	2.3	135	86	1	423	26	25	18	29	1.98
912968--913171	87	2.3	87	86	1	284	25	26	20	27	1.99
913112--913200	39	2.3	39	88	0	124	26	29	21	22	1.99
913236--913362	49	2.5	50	85	5	166	23	27	19	29	1.98
913268--913505	49	4.8	49	75	8	198	23	25	18	33	1.97
934124--934193	33	2.1	33	92	5	115	35	17	12	34	1.88
934178--934278	42	2.4	43	90	5	161	29	15	22	31	1.95
936475--936507	17	1.9	17	100	0	66	18	12	21	48	1.80
937405--938989	475	3.3	473	84	2	1925	32	17	14	35	1.90
937724--938873	159	7.3	157	67	11	465	31	17	14	36	1.90
938818--939774	156	6.1	155	72	8	639	32	19	13	34	1.91
939128--941046	475	4.0	476	84	1	2366	31	18	15	35	1.91
944187--944259	20	3.7	20	88	3	103	42	12	15	30	1.83
944284--944419	32	4.2	32	95	0	236	35	20	13	30	1.91
944291--944417	19	7.6	19	63	28	83	35	21	13	29	1.91
944733--950035	476	11.1	475	82	3	5773	31	18	14	35	1.91
950032--953668	475	7.7	475	83	2	4241	30	18	14	36	1.91
951029--953523	158	15.7	157	66	14	470	31	18	14	36	1.90
955791--955823	12	2.8	12	82	17	50	30	27	0	42	1.56
957272--957316	23	1.9	23	81	4	54	40	8	8	42	1.67
959632--959924	149	2.0	149	95	0	532	36	16	8	38	1.79
963186--963239	22	2.3	24	78	18	60	53	0	1	44	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
967056--967101	20	2.2	21	88	3	67	78	0	10	10	0.97
967603--967648	18	2.4	20	79	17	53	60	6	0	32	1.22
968668--968701	17	2.0	17	94	0	59	38	8	17	35	1.81
970879--971080	78	2.6	77	80	9	216	37	20	7	34	1.82
972447--972510	33	2.0	33	87	3	94	39	15	14	31	1.87
973404--973449	19	2.5	18	89	6	74	47	17	2	32	1.60
974523--974577	20	2.8	20	88	5	76	40	14	14	30	1.86
974649--974674	13	2.0	13	100	0	52	38	15	15	30	1.88
974630--974695	33	2.0	34	87	3	98	42	16	13	27	1.86
980135--980173	13	3.0	13	96	0	69	30	17	15	35	1.91
982623--982677	20	2.8	20	88	5	76	40	14	14	30	1.86
982749--982774	13	2.0	13	100	0	52	38	15	15	30	1.88
987334--987374	7	5.9	7	100	0	82	70	14	0	14	1.16
987334--987381	21	2.4	20	93	6	80	70	12	0	16	1.16
987336--987387	7	7.8	6	91	4	50	75	9	1	13	1.14
987801--987830	2	15.0	2	100	0	60	50	0	0	50	1.00
990398--990432	2	17.5	2	100	0	70	48	0	51	0	1.00
993696--993721	13	2.0	13	100	0	52	30	15	15	38	1.88
993676--993740	33	2.0	33	87	6	96	27	13	16	41	1.87
995133--995351	110	2.0	110	92	0	366	35	12	18	33	1.88
996539--996714	76	2.3	77	88	2	257	38	13	21	27	1.90
996657--996762	48	2.2	48	94	0	185	37	14	19	28	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1000847--1000881	17	2.1	17	100	0	70	5	11	5	77	1.12
1011452--1011478	13	2.1	13	100	0	54	29	14	14	40	1.86
1011433--1011497	32	2.0	32	90	3	103	26	16	16	40	1.90
1017726--1017767	13	3.2	13	93	0	66	28	9	16	45	1.79
1020224--1020288	32	2.0	33	90	3	105	24	15	18	41	1.89
1020354--1020384	13	2.4	13	94	0	53	35	16	12	35	1.87
1020338--1020404	33	2.0	32	86	11	91	35	11	17	34	1.87
1022050--1022126	20	3.8	20	79	6	93	40	10	15	33	1.81
1024135--1024159	2	12.5	2	100	0	50	52	0	0	48	1.00
1024424--1024467	21	2.1	21	87	4	63	40	0	6	52	1.28
1025922--1026098	28	6.4	28	82	10	184	23	16	29	30	1.96
1025920--1026104	56	3.3	55	85	5	223	23	15	30	30	1.96
1025920--1026098	84	2.2	83	85	6	238	23	16	29	30	1.96
1027322--1027354	14	2.4	14	94	0	57	0	0	18	81	0.68
1040964--1041040	20	3.8	20	83	6	111	38	11	16	32	1.85
1049134--1049230	51	1.9	51	91	0	158	27	16	11	44	1.82
1061216--1061557	52	6.6	52	83	4	354	37	17	20	24	1.94
1061560--1061922	58	6.6	56	69	14	200	39	14	21	24	1.90
1061582--1061879	52	5.5	52	71	13	190	38	14	21	25	1.91
1061523--1061922	110	3.6	110	86	1	527	39	14	21	24	1.91
1062496--1062548	19	2.7	20	85	2	72	35	16	15	32	1.90
1065566--1065605	21	1.9	21	85	10	55	52	5	17	25	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1070056--1070825	383	2.0	383	97	0	1450	26	26	17	29	1.97
1071899--1071925	13	2.1	13	100	0	54	29	14	14	40	1.86
1071971--1072000	13	2.3	13	94	0	51	36	16	10	36	1.82
1073404--1073446	21	2.0	22	86	4	61	58	0	13	27	1.37
1078079--1078107	15	1.9	15	100	0	58	27	27	0	44	1.54
1078230--1078271	20	2.1	20	100	0	84	14	19	28	38	1.90
1079308--1079554	79	3.1	77	79	9	257	32	17	24	25	1.96
1079514--1079580	28	2.4	28	84	0	80	29	17	26	25	1.98
1079573--1079683	51	2.2	50	85	4	143	31	11	25	31	1.91
1081741--1081808	13	5.2	13	81	0	91	29	10	19	41	1.84
1081741--1081808	26	2.6	26	95	0	127	29	10	19	41	1.84
1083884--1083940	21	2.7	21	88	0	78	63	0	19	17	1.32
1087244--1087268	13	1.9	13	100	0	50	32	16	16	36	1.90
1088673--1088702	13	2.3	13	94	0	51	40	10	16	33	1.82
1089285--1090096	61	13.4	61	79	8	772	26	19	27	25	1.99
1089284--1090088	121	6.7	123	80	8	779	26	19	27	25	1.99
1089352--1090096	298	2.5	297	83	7	902	27	19	27	25	1.99
1091075--1091129	12	4.7	12	82	8	69	0	0	12	87	0.55
1091070--1091129	24	2.5	24	86	5	86	1	0	11	86	0.64
1099762--1099858	19	5.8	18	72	27	97	32	12	17	37	1.87
1099783--1099839	13	3.9	13	76	24	60	35	14	17	33	1.90
1099764--1099865	32	3.2	32	98	0	195	33	12	17	36	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1099911--1099935	13	1.9	13	100	0	50	32	16	16	36	1.90

Tables:   1   2   3   4   5   6

The End!