genome.fa.s376.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold376
Parameters: 2 7 7 80 10 50 1000
Length:  900718

Tables:   1   2   3   4   5   6   

This is table  3  of  6  ( 628 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
317913--317951	20	2.0	20	100	0	78	30	20	10	38	1.86
317917--317966	20	2.5	20	87	9	66	32	24	10	34	1.88
321795--321933	51	2.7	50	86	3	179	41	11	15	30	1.83
321969--322042	20	3.6	20	83	7	87	35	17	10	36	1.85
321968--322042	21	3.6	21	80	10	84	34	17	10	37	1.84
322880--322906	13	2.1	13	100	0	54	29	14	14	40	1.86
322955--323023	33	2.1	33	86	5	95	33	13	17	36	1.88
324517--324573	19	2.9	19	86	2	78	33	15	15	35	1.90
324625--324670	13	4.0	13	69	30	50	32	13	17	36	1.88
324602--324670	33	2.1	33	89	5	104	33	11	17	37	1.86
327151--327184	17	2.0	17	100	0	68	29	11	23	35	1.90
331919--331972	26	2.1	26	92	0	90	33	16	11	38	1.84
337624--337651	13	2.2	13	100	0	56	39	17	14	28	1.89
337704--337789	19	4.7	19	76	20	85	36	16	11	36	1.85
337696--337766	32	2.2	32	94	0	124	36	18	11	33	1.86
342952--343026	20	3.8	19	78	7	78	41	10	13	34	1.79
346783--346809	4	6.8	4	100	0	54	22	0	0	77	0.76
349123--349197	20	3.4	21	72	13	71	45	0	5	49	1.25
349255--349303	5	10.4	5	75	20	52	63	0	0	36	0.95
349234--349300	11	6.0	11	74	10	55	59	0	0	40	0.97
349235--349304	29	2.4	29	84	13	92	60	0	0	40	0.97
354165--354190	13	2.0	13	100	0	52	30	15	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
354145--354208	32	2.0	33	90	3	103	28	14	15	42	1.86
354238--354292	20	2.7	21	85	2	76	30	18	12	38	1.88
356285--356327	20	2.1	20	82	4	50	9	27	44	18	1.80
362020--362168	52	2.9	52	88	0	226	31	16	18	34	1.93
362157--362181	13	1.9	13	100	0	50	36	16	16	32	1.90
362243--362267	13	1.9	13	100	0	50	32	16	16	36	1.90
366560--366585	13	2.0	13	100	0	52	30	15	15	38	1.88
366540--366603	32	2.0	33	90	3	103	28	14	15	42	1.86
370615--370640	8	3.2	8	100	0	52	15	0	23	61	1.33
371293--371332	20	2.0	21	95	5	73	17	45	30	7	1.76
372701--372745	22	2.0	22	95	0	81	35	0	31	33	1.58
373413--373438	13	2.0	13	100	0	52	30	15	15	38	1.88
373393--373460	33	2.1	32	88	2	100	33	19	13	33	1.90
374204--374230	13	2.1	13	100	0	54	29	14	14	40	1.86
374284--374349	33	2.0	33	85	5	89	34	16	16	31	1.92
376553--376595	21	2.1	20	83	12	52	53	6	13	25	1.65
376553--376595	20	2.1	21	83	12	54	53	6	13	25	1.65
383008--383034	13	2.1	13	100	0	54	29	14	14	40	1.86
383083--383151	33	2.1	33	86	5	95	33	11	18	36	1.87
387788--387851	33	2.0	32	84	9	85	32	18	14	34	1.91
388215--388287	20	3.6	20	81	3	101	36	13	17	31	1.89
388232--388308	21	3.7	21	77	6	86	42	11	16	28	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
388215--388308	41	2.3	41	94	3	163	39	12	18	29	1.88
388347--388372	13	2.0	13	100	0	52	38	15	15	30	1.88
392434--392464	15	2.1	15	93	0	53	48	16	22	12	1.80
394543--394581	13	3.0	13	96	0	69	30	17	15	35	1.91
397015--397087	20	3.6	20	81	3	101	36	13	17	31	1.89
397032--397108	21	3.7	21	77	6	86	42	11	16	28	1.84
397015--397108	41	2.3	41	94	3	163	39	12	18	29	1.88
397147--397172	13	2.0	13	100	0	52	38	15	15	30	1.88
406438--406484	22	2.1	22	96	0	85	23	12	17	46	1.82
407435--407489	19	2.8	20	80	5	67	38	14	14	32	1.87
407475--407501	13	2.1	13	100	0	54	40	14	14	29	1.86
409326--409398	20	3.6	20	81	5	76	31	12	16	39	1.85
409233--409472	112	2.1	112	80	6	270	30	12	16	40	1.85
419004--419190	52	3.6	52	78	8	211	28	24	10	36	1.89
418996--419185	102	1.9	102	89	0	299	30	23	10	36	1.87
419122--419735	79	7.8	77	77	10	478	28	24	11	36	1.90
419123--419735	158	3.9	156	81	8	649	28	24	11	36	1.90
433016--433061	21	2.2	20	81	11	58	32	19	4	43	1.71
435479--435504	13	2.0	13	100	0	52	38	15	15	30	1.88
436291--436519	79	2.9	79	83	3	255	28	24	10	36	1.89
438813--439551	159	4.7	159	79	5	676	27	24	12	35	1.91
438821--439551	79	9.2	80	81	3	647	27	25	12	34	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
442308--442531	107	2.1	107	94	0	385	33	16	15	34	1.90
442797--442834	11	3.5	11	85	7	51	47	2	2	47	1.30
446102--446320	97	2.3	96	86	5	291	30	10	29	29	1.91
457025--457057	17	1.9	17	100	0	66	42	12	12	33	1.79
458606--458658	19	2.8	19	100	0	106	32	11	18	37	1.87
458700--458724	13	1.9	13	100	0	50	32	16	16	36	1.90
458733--458858	52	2.4	52	94	0	225	35	19	19	26	1.95
462481--462507	3	9.0	3	100	0	54	66	0	0	33	0.92
462745--462791	22	2.2	20	85	7	58	4	21	0	74	0.99
462725--462797	11	6.8	10	74	21	51	5	19	1	73	1.09
464335--464940	57	10.6	57	83	5	667	24	16	28	30	1.97
464334--464945	284	2.2	284	84	3	793	25	16	28	30	1.97
464335--464940	28	21.3	28	85	4	673	24	16	28	30	1.97
464959--465027	26	2.6	26	77	11	70	37	15	14	31	1.88
466211--466248	13	2.9	13	88	7	51	7	2	10	78	1.04
466201--466276	12	6.6	11	77	10	73	3	3	9	82	0.91
466203--466276	33	2.2	33	86	11	98	4	4	9	82	0.93
473182--473220	21	1.9	20	89	5	60	35	10	15	38	1.81
477798--478032	49	4.8	49	81	6	228	33	19	24	22	1.97
478023--478240	57	3.8	55	77	12	199	21	17	28	32	1.96
478021--478238	86	2.5	85	85	8	298	22	17	28	31	1.96
478021--478238	29	7.6	28	77	11	201	22	17	28	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
478997--479096	50	2.0	50	100	0	200	22	20	26	32	1.98
492979--493009	9	3.4	9	100	0	62	58	19	0	22	1.40
502193--502530	97	3.5	97	92	0	532	28	13	29	28	1.94
510397--510439	23	1.9	22	90	4	68	51	2	0	46	1.13
511783--511853	20	3.5	20	78	14	76	28	15	16	39	1.89
511890--511948	21	2.8	21	97	0	109	37	15	10	37	1.81
512000--512042	21	2.0	21	90	0	68	41	18	9	30	1.82
512362--512400	20	2.0	20	89	0	60	46	5	17	30	1.70
512363--512408	20	2.3	20	84	0	56	47	8	13	30	1.72
516412--516439	10	2.8	10	100	0	56	89	0	10	0	0.49
518026--518638	305	2.0	306	92	0	1021	34	15	18	31	1.92
518908--519086	82	2.2	82	90	2	279	26	16	15	41	1.88
518971--519026	20	2.8	20	87	12	80	23	14	17	44	1.85
519010--519037	13	2.2	13	100	0	56	28	14	14	42	1.84
521550--521622	28	2.6	28	84	2	85	21	31	21	24	1.98
521658--521727	28	2.5	28	77	15	83	21	25	22	30	1.99
521714--521831	51	2.3	51	88	5	177	33	30	7	28	1.85
521714--521882	51	3.3	49	81	6	176	31	28	10	30	1.90
534162--534231	1	70.0	1	76	0	68	88	7	1	2	0.66
534162--534231	10	6.5	10	80	15	77	88	7	1	2	0.66
534163--534230	17	3.9	17	83	16	95	88	7	1	2	0.68
534163--534228	24	2.6	24	85	7	78	87	7	1	3	0.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
534162--534246	9	9.1	9	79	20	61	85	5	5	2	0.80
534172--534243	8	9.5	8	83	6	53	86	5	5	2	0.79
534880--535194	61	5.2	61	80	8	306	25	24	21	29	1.99
534880--535194	116	2.6	116	80	9	316	25	24	21	29	1.99
535195--535379	43	4.4	42	78	9	168	20	27	15	37	1.92
535195--535396	42	4.8	43	76	12	154	20	26	13	39	1.90
536078--536182	29	3.5	29	77	10	120	29	17	15	38	1.90
536124--536153	13	2.3	13	94	0	51	33	16	10	40	1.82
536075--536201	62	2.0	62	95	0	227	31	17	13	37	1.88
538652--538722	28	2.5	28	84	4	90	19	29	19	30	1.97

Tables:   1   2   3   4   5   6