genome.fa.s376.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold376
Parameters: 2 7 7 80 10 50 1000
Length:  900718

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 628 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
864293--864344	20	2.7	20	85	8	72	36	17	17	28	1.92
872840--872864	13	1.9	13	100	0	50	32	16	16	36	1.90
872819--872881	33	1.9	32	87	3	90	33	20	15	30	1.94
872934--872985	20	2.7	19	85	8	61	38	15	13	32	1.86
874248--874292	10	4.3	10	83	10	54	35	2	6	55	1.38
874281--874373	43	2.1	43	98	2	177	35	12	5	46	1.65
874709--875052	166	2.1	167	82	7	407	31	10	9	48	1.69
876677--877280	310	1.9	310	81	7	735	23	16	19	39	1.92
876689--877289	155	3.9	155	77	8	634	23	16	19	39	1.92
880422--880476	20	2.8	20	80	0	74	45	9	14	30	1.76
880583--880636	20	2.7	20	88	2	81	35	18	9	37	1.83
885390--885461	28	2.6	28	88	0	99	23	19	34	22	1.96
885450--885831	52	7.3	52	71	15	250	32	13	25	28	1.93
885451--885831	104	3.6	103	75	15	402	33	13	25	28	1.93
885383--885945	212	2.6	212	96	1	1011	31	14	26	27	1.94
885606--885673	28	2.4	27	88	9	93	26	19	30	23	1.98
885805--885886	27	3.0	28	82	10	98	26	21	29	21	1.99
888300--888325	13	2.0	13	100	0	52	38	15	15	30	1.88
888279--888345	33	2.0	33	88	0	98	43	16	14	25	1.86
888365--888432	19	3.9	18	76	23	83	38	14	11	35	1.83
888387--888411	13	1.9	13	100	0	50	32	16	16	36	1.90
888368--888430	32	2.0	32	96	0	117	36	15	12	34	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
888488--888544	21	2.7	21	97	0	105	36	19	10	33	1.86
888549--888596	1	48.0	1	93	0	69	4	2	0	93	0.39
888549--888599	19	2.8	19	91	8	81	7	3	0	88	0.63
889193--889927	55	13.3	55	91	4	1074	20	20	30	28	1.97
889684--889770	29	3.2	26	66	22	70	17	18	35	28	1.93
890892--890976	1	85.0	1	85	0	116	0	3	3	92	0.44

Tables:   1   2   3   4   5   6

The End!