genome.fa.s376.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold376
Parameters: 2 7 7 80 10 50 1000
Length:  900718

Tables:   1   2   3   4   5   6   

This is table  4  of  6  ( 628 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
538819--538980	51	3.2	50	76	6	155	31	27	9	32	1.88
540103--540322	33	7.0	30	75	10	163	21	30	14	34	1.92
540137--540324	64	2.9	63	83	3	223	20	30	13	35	1.91
540134--540324	33	5.9	33	80	6	196	20	30	13	35	1.92
540309--540558	60	4.2	60	77	11	253	21	30	13	34	1.92
540339--540571	113	2.0	115	87	2	335	22	31	13	33	1.92
540406--540646	26	8.4	27	74	15	164	21	30	13	34	1.92
540434--540646	87	2.4	87	87	2	311	21	30	13	34	1.91
540536--540728	63	3.1	60	79	7	215	21	30	12	34	1.91
540613--540682	37	2.0	35	86	8	97	17	30	12	40	1.87
540873--541052	52	3.5	52	73	3	137	25	26	15	33	1.95
540873--541063	104	1.8	104	79	0	220	25	26	15	33	1.95
541864--541938	20	3.7	20	77	7	78	38	12	9	40	1.75
542552--542611	28	2.1	29	93	3	104	21	18	10	50	1.76
547465--547516	23	2.2	24	83	10	63	19	15	53	11	1.71
550843--550936	20	4.7	19	68	12	55	35	14	15	34	1.89
551546--551675	28	4.5	28	79	4	134	23	15	31	29	1.95
551423--551931	256	2.0	256	88	2	754	25	16	28	29	1.97
551807--552582	28	27.3	28	85	3	960	23	18	31	26	1.97
553793--553855	1	63.0	1	77	0	63	0	1	9	88	0.57
553771--553855	8	10.5	8	79	13	86	1	2	10	85	0.73
553771--553855	25	3.5	25	85	7	104	1	2	10	85	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
553782--553856	9	8.0	9	82	14	82	0	2	12	85	0.70
557755--557819	33	2.0	33	84	6	87	41	15	13	29	1.86
564095--564140	21	2.2	20	81	11	58	32	19	4	43	1.71
566543--566607	20	3.6	20	73	26	81	38	18	15	27	1.91
566562--566620	13	4.0	13	73	26	55	38	16	15	28	1.89
566543--566640	33	3.0	33	93	3	162	40	17	14	27	1.88
577759--577835	20	3.9	19	78	8	91	41	11	12	33	1.80
578311--578359	20	2.6	19	90	9	75	32	12	14	40	1.83
579115--579165	21	2.5	21	87	9	70	35	17	13	33	1.89
579198--579272	20	3.8	20	89	3	116	36	17	14	32	1.90
587667--587785	52	2.3	51	89	1	175	30	22	8	38	1.84
587669--587785	51	2.3	52	89	1	173	29	23	7	39	1.82
587723--588096	79	4.7	78	77	9	337	32	23	7	36	1.83
587728--588096	159	2.3	158	82	5	415	31	23	7	36	1.84
595637--595661	13	1.9	13	100	0	50	36	16	16	32	1.90
595714--595778	19	3.7	19	71	23	70	36	16	12	33	1.87
595708--595776	32	2.2	32	91	0	111	36	17	13	33	1.88
596552--597104	43	11.9	43	74	14	422	31	18	25	24	1.97
596490--597098	92	6.4	92	85	6	627	32	17	24	24	1.97
596860--597104	91	2.6	95	85	6	318	31	18	25	24	1.97
597157--597481	58	5.6	57	86	5	438	20	16	30	32	1.95
597156--597481	115	2.8	115	90	2	483	20	16	30	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
612790--612918	52	2.5	52	97	0	249	27	18	18	34	1.95
612927--612951	13	1.9	13	100	0	50	36	16	16	32	1.90
612990--613047	13	4.0	13	74	23	53	32	15	15	36	1.89
613004--613069	19	3.9	17	74	25	68	37	15	12	34	1.84
612991--613066	32	2.4	32	93	0	125	35	15	14	34	1.88
616704--616958	35	7.4	35	77	6	223	24	23	10	41	1.85
616704--616958	68	3.7	68	83	5	248	24	23	10	41	1.85
620379--620811	35	12.6	35	78	8	383	19	21	13	44	1.85
620379--620809	105	4.2	101	79	9	435	19	22	13	44	1.85
620597--620653	30	1.9	30	96	0	105	14	22	14	49	1.79
620819--620919	35	2.9	35	82	5	132	22	20	12	43	1.86
620819--620943	35	3.6	35	79	6	92	22	21	12	43	1.86
622001--622025	13	1.9	13	100	0	50	32	16	16	36	1.90
621981--622048	33	2.1	33	89	8	104	36	16	14	32	1.89
623303--623730	166	2.6	165	80	7	465	31	10	8	50	1.66
624211--624249	15	2.6	15	87	0	60	82	0	17	0	0.68
625163--625439	142	2.0	142	87	4	407	36	10	9	43	1.71
625620--626228	157	3.9	156	81	4	670	25	16	19	38	1.92
625620--626228	314	1.9	314	81	6	743	25	16	19	38	1.92
626193--626687	149	3.3	146	79	5	512	25	16	17	39	1.91
626266--626719	149	3.1	149	81	3	529	25	17	18	38	1.92
638368--638417	19	2.6	19	96	0	91	38	18	12	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
638406--638430	13	1.9	13	100	0	50	32	16	16	36	1.90
641678--641739	7	8.7	7	87	7	90	82	3	0	14	0.80
641723--641761	18	2.2	18	85	0	51	82	2	10	5	0.93
642440--642743	91	3.3	92	80	8	320	31	26	14	28	1.95
643250--643849	35	17.2	35	78	2	483	23	23	11	41	1.87
643757--643940	94	2.0	94	93	0	314	21	20	15	42	1.89
643866--644010	35	4.1	35	85	1	175	21	19	15	43	1.88
643864--644044	35	5.2	35	85	1	143	20	17	16	45	1.85
644708--644752	22	2.1	21	83	4	54	35	2	6	55	1.38
645807--645831	5	5.0	5	100	0	50	20	0	0	80	0.72
646590--646619	13	2.3	13	94	0	51	36	16	13	33	1.88
646575--646639	33	2.0	33	87	6	96	35	13	16	33	1.89
649070--649094	13	1.9	13	100	0	50	32	16	16	36	1.90
649130--649185	22	2.5	22	94	0	94	28	23	10	37	1.88
649200--649352	33	4.5	33	71	22	104	32	20	11	35	1.89
649350--649438	33	2.8	31	86	9	126	28	35	17	17	1.94
649431--649940	49	10.8	48	85	8	663	25	26	18	29	1.98
649479--649940	92	4.9	92	90	5	703	25	25	18	30	1.98
649758--649896	43	3.1	43	90	7	206	25	25	18	29	1.98
649850--650070	52	3.9	55	74	13	180	23	25	14	36	1.93
650789--650826	13	2.9	13	100	0	76	36	15	15	31	1.90
650889--650913	13	1.9	13	100	0	50	32	16	16	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
650922--651046	52	2.4	52	95	0	223	36	18	17	28	1.94
654595--654661	36	1.9	35	85	11	93	31	10	26	31	1.90
654972--655003	15	2.1	16	94	5	57	59	3	12	25	1.48
659114--659153	21	2.0	21	90	5	64	32	20	0	47	1.50
661451--661480	13	2.3	13	94	0	51	36	16	13	33	1.88
661436--661500	33	2.0	33	90	6	105	33	13	18	33	1.90
663100--663379	153	1.8	153	89	0	443	36	10	9	43	1.72
665258--665283	13	2.0	13	100	0	52	30	15	15	38	1.88
665237--665301	32	2.0	34	87	6	98	27	13	15	43	1.85
665332--665405	20	3.7	20	82	8	78	29	17	13	39	1.88
665922--666030	47	2.6	39	74	21	110	34	21	4	39	1.74
665942--666038	47	2.1	47	98	0	185	34	21	6	38	1.79
667391--667433	20	2.1	20	82	4	50	9	27	44	18	1.80
669965--669995	15	2.1	15	93	0	53	12	22	16	48	1.80
673626--673678	19	2.7	20	88	8	81	28	11	15	45	1.80
673729--673784	20	2.8	20	86	5	69	32	14	14	39	1.86
674074--674445	167	2.2	167	83	5	457	31	12	8	47	1.71
674957--675008	20	2.6	20	81	6	61	32	17	13	36	1.89
681515--681645	33	4.0	33	93	4	203	32	18	12	35	1.89
681599--681629	13	2.4	13	94	0	53	35	12	16	35	1.87
682278--682312	17	2.1	17	89	5	54	31	34	0	34	1.58
690380--690410	13	2.4	13	94	0	53	35	12	16	35	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
693469--693617	52	2.9	51	89	4	235	30	17	18	32	1.94
693606--693630	13	1.9	13	100	0	50	36	16	16	32	1.90
693671--693737	33	2.0	33	88	0	98	40	14	11	32	1.83
693693--693717	13	1.9	13	100	0	50	32	16	16	36	1.90
694013--694066	19	2.7	19	82	5	63	35	16	14	33	1.90
694055--694079	13	1.9	13	100	0	50	32	16	16	36	1.90
694036--694100	33	2.0	32	87	3	94	36	15	16	30	1.90
695161--695233	20	3.6	20	81	3	101	35	13	19	31	1.91
695179--695254	21	3.7	21	80	3	100	42	11	17	28	1.84
695161--695254	41	2.3	41	98	0	179	39	12	18	29	1.88

Tables:   1   2   3   4   5   6