Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold385
Parameters: 2 7 7 80 10 50 1000
Length:  1395621

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  10  of  10  ( 1109 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1326848--1326969
59
2.1
58
80
4
129
4
12
6
77
1.11
1338126--1338302
53
3.3
53
85
1
230
27
36
12
23
1.91
1338307--1338456
53
2.8
53
81
0
183
28
34
13
24
1.93
1338190--1338439
137
1.8
137
87
0
374
28
35
13
23
1.92
1341166--1341227
32
1.9
33
86
3
90
32
9
12
45
1.75
1344151--1344199
21
2.3
21
89
0
71
30
16
20
32
1.94
1346845--1346886
2
21.0
2
100
0
84
50
0
0
50
1.00
1347648--1347691
3
14.7
3
80
0
52
31
25
34
9
1.87
1347648--1347687
6
6.7
6
97
0
62
32
22
35
10
1.87
1349743--1349786
2
22.0
2
100
0
88
50
0
0
50
1.00
1350568--1350599
2
16.0
2
93
0
55
50
3
0
46
1.17
1355832--1355897
27
2.6
25
75
13
62
46
19
7
25
1.76
1357781--1357826
21
2.1
22
84
4
58
19
30
19
30
1.97
1359062--1359087
13
2.0
13
100
0
52
30
15
15
38
1.88
1359042--1359105
32
2.0
33
90
3
103
28
14
15
42
1.86
1359719--1359807
39
2.3
38
81
13
110
34
21
4
39
1.74
1359983--1360025
23
2.0
21
86
9
59
60
13
9
16
1.58
1361163--1361205
20
2.1
20
82
4
50
9
27
44
18
1.80
1361646--1361681
13
2.8
13
95
0
63
33
13
19
33
1.91
1363765--1363795
15
2.1
15
93
0
53
12
22
16
48
1.80
1369789--1369819
15
2.1
15
100
0
62
22
12
25
38
1.90
1370216--1370277
27
2.4
25
81
5
70
45
20
8
25
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1374972--1375003
2
16.0
2
100
0
64
50
0
0
50
1.00
1380917--1380955
18
2.2
18
85
0
51
58
5
12
23
1.54
1388145--1388215
36
2.0
36
88
2
108
26
29
12
30
1.93
1389725--1389782
21
2.8
21
82
15
75
20
24
1
53
1.55
1391364--1391455
36
2.7
35
74
11
95
30
25
14
30
1.94
1391846--1391971
63
2.0
63
90
3
200
34
16
17
30
1.92
1394777--1394963
50
3.6
53
80
3
168
43
11
11
32
1.78

Tables:   1   2   3   4   5   6   7   8   9   10

The End!