genome.fa.s385.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold385
Parameters: 2 7 7 80 10 50 1000
Length:  1395621

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  4  of  10  ( 1109 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
349171--349218	23	2.1	23	100	0	96	58	4	4	33	1.36
349277--349323	25	1.9	24	82	4	58	44	0	0	55	0.99
349326--349367	21	2.0	20	86	4	57	23	2	0	73	0.94
350373--350711	187	1.8	185	84	6	461	24	12	19	43	1.85
352815--352857	2	24.0	2	78	21	51	51	0	0	48	1.00
352815--352857	9	4.8	10	76	23	51	51	0	0	48	1.00
352805--352857	28	1.9	27	85	11	72	47	1	0	50	1.12
353111--353144	17	2.0	17	88	0	50	58	0	0	41	0.98
353367--353430	28	2.3	28	86	5	85	64	0	0	35	0.94
353417--353481	24	2.6	26	77	22	77	41	3	3	52	1.32
357005--357035	3	10.3	3	92	0	53	29	35	3	32	1.73
359238--359277	2	20.0	2	90	10	64	47	0	2	50	1.14
359671--359700	2	15.0	2	100	0	60	50	0	50	0	1.00
364734--364758	2	12.5	2	100	0	50	48	0	0	52	1.00
366008--366033	2	13.0	2	100	0	52	50	0	0	50	1.00
368331--368375	23	2.0	23	86	0	63	57	0	0	42	0.98
369073--369110	20	1.9	20	88	0	58	44	0	2	52	1.14
369135--369196	26	2.4	25	82	15	72	64	0	1	33	1.03
369306--369343	15	2.5	15	91	0	58	39	0	5	55	1.23
369637--369666	2	15.0	2	92	0	51	53	0	0	46	1.00
370332--370405	25	2.8	25	82	10	78	55	0	2	41	1.14
370346--370405	13	4.8	12	74	10	57	55	0	3	41	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
371356--371405	8	5.9	9	80	15	54	44	0	0	56	0.99
371359--371413	24	2.3	25	84	6	69	41	0	0	58	0.98
372836--372870	2	17.5	2	93	0	61	48	2	0	48	1.16
373108--373145	14	2.6	15	87	8	60	55	0	0	44	0.99
374177--374201	8	3.1	8	100	0	50	16	84	0	0	0.63
379739--379783	19	2.3	20	82	17	60	53	0	2	44	1.13
379865--380009	76	1.9	73	79	12	159	53	2	1	43	1.21
384304--384356	20	2.5	22	76	8	58	41	0	0	58	0.98
384346--384388	19	2.3	19	87	0	59	48	0	0	51	1.00
384362--384405	20	2.3	19	88	4	61	45	0	0	54	0.99
385944--386005	21	2.9	22	72	11	65	53	0	1	45	1.10
387749--387783	13	2.8	13	91	4	54	91	0	8	0	0.42
387748--387783	9	3.9	9	88	3	54	88	0	11	0	0.50
388653--388696	14	3.1	14	80	0	52	45	0	0	54	0.99
388679--388786	30	3.4	31	73	20	89	47	0	0	51	1.07
388706--388754	12	4.0	12	84	5	62	40	2	0	57	1.10
388706--388753	25	1.9	25	86	0	69	41	2	0	56	1.11
388965--389106	64	2.3	63	78	9	139	39	5	0	54	1.29
393093--393251	46	3.5	46	76	13	134	60	1	0	38	1.05
393079--393178	52	1.9	52	82	8	123	59	2	0	39	1.09
393136--393249	32	3.6	34	75	20	102	58	0	0	40	1.04
393191--393232	19	2.2	19	87	8	59	64	0	0	35	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
393111--393232	27	4.2	28	73	15	70	59	0	0	39	1.03
393199--393253	19	2.9	19	81	7	67	65	1	0	32	1.03
393138--393253	8	13.1	8	71	22	65	59	0	0	39	1.03
393336--393377	15	2.7	15	79	17	50	47	2	0	50	1.14
393363--393429	19	3.7	18	76	15	75	58	0	0	41	0.98
393343--393414	27	2.7	28	80	8	78	55	1	0	43	1.08
398133--398167	2	17.5	2	100	0	70	51	0	0	48	1.00
401337--401574	123	1.9	123	92	0	395	37	9	11	41	1.74
403643--403673	16	1.9	16	100	0	62	58	0	6	35	1.24
403680--403749	29	2.4	29	85	2	86	45	0	0	54	0.99
403707--403757	20	2.8	20	72	22	58	52	0	0	47	1.00
404123--404155	17	1.9	17	93	0	57	63	0	0	36	0.95
405629--405683	21	2.7	20	80	11	67	38	0	0	61	0.96
405639--405685	17	2.6	18	86	10	60	40	0	0	59	0.97
405642--405683	13	3.4	12	81	12	50	40	0	0	59	0.97
405739--405786	12	4.0	12	84	10	55	58	2	0	39	1.10
405766--405795	13	2.2	14	94	5	53	53	0	0	46	1.00
406798--406855	20	2.9	20	82	5	64	56	0	0	43	0.99
406795--406860	20	3.3	20	71	22	59	54	0	0	45	0.99
408499--408542	19	2.3	19	88	0	61	6	31	2	59	1.36
409294--409352	12	4.9	12	91	0	100	20	16	42	20	1.89
409264--409389	24	5.2	24	80	4	121	15	19	41	23	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
409264--409388	36	3.5	35	76	4	106	14	20	41	24	1.89
411771--411803	17	1.9	17	93	0	57	69	0	0	30	0.88
411862--412008	2	74.0	2	77	11	142	48	3	0	47	1.23
419567--419606	2	20.0	2	100	0	80	50	0	0	50	1.00
423154--423187	17	2.0	17	100	0	68	29	5	17	47	1.71
427414--427447	2	17.0	2	100	0	68	50	0	0	50	1.00
427810--427890	32	2.5	31	84	9	99	41	2	14	40	1.59
428551--428594	22	2.0	23	86	8	65	45	0	2	52	1.13
433457--433530	27	2.6	29	83	10	91	43	0	0	56	0.99
433474--433579	16	6.1	18	67	24	66	43	0	0	55	1.06
433959--434083	62	2.0	62	93	0	214	41	8	4	45	1.54
434243--434273	2	16.0	2	93	6	55	51	0	0	48	1.00
435151--435177	3	9.0	3	100	0	54	33	0	0	66	0.92
437927--437963	2	18.5	2	100	0	74	48	0	0	51	1.00
438968--439009	2	21.0	2	100	0	84	50	0	0	50	1.00
440030--440083	20	2.6	21	76	5	56	57	5	1	35	1.33
440680--440720	20	2.0	21	90	4	66	56	0	0	43	0.99
441150--441206	19	3.0	18	73	17	53	50	0	0	49	1.00
441250--441287	18	2.2	17	86	13	51	34	2	0	63	1.09
441474--441499	2	13.0	2	100	0	52	50	0	0	50	1.00
441870--441900	13	2.3	14	94	5	55	54	0	0	45	0.99
441921--441958	11	3.5	11	82	3	51	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
444587--444611	3	8.3	3	100	0	50	0	32	0	68	0.90
444859--444894	2	18.0	2	100	0	72	50	0	0	50	1.00
445086--445161	23	3.3	23	78	7	82	50	1	0	48	1.09
445157--445203	13	3.4	13	81	16	58	53	0	0	46	1.00
446701--446810	27	3.9	28	75	17	84	43	0	0	55	1.06
446716--446764	18	2.8	18	77	22	59	48	0	0	51	1.00
446797--446890	41	2.3	41	84	1	125	39	1	0	59	1.04
446853--446897	15	3.2	13	80	20	54	46	2	0	51	1.13
447186--447215	6	5.2	6	96	4	53	50	0	0	50	1.00
447953--448013	22	2.7	22	80	10	61	39	1	0	59	1.08
447952--448014	30	2.1	31	82	14	78	39	1	0	58	1.07
448003--448067	20	3.4	19	80	14	64	63	0	0	36	0.95
448017--448068	20	2.6	19	87	6	68	59	0	0	40	0.97
448178--448229	20	2.6	20	75	9	52	36	3	0	59	1.16
448554--448593	19	2.2	18	86	4	53	47	2	7	42	1.45
448807--448849	19	2.3	18	84	4	50	46	2	2	48	1.27
449000--449041	13	3.1	13	75	24	50	54	4	0	40	1.21
449037--449132	42	2.3	41	80	10	97	56	1	2	40	1.18
449148--449213	23	2.9	22	82	8	78	51	1	0	46	1.10
449168--449212	8	5.9	8	84	7	58	51	0	0	48	1.00
449149--449208	31	1.9	31	83	12	79	48	1	0	50	1.11
449168--449212	15	2.9	16	80	9	58	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
449688--449764	18	4.3	18	75	14	61	64	3	1	29	1.19
449797--449834	8	4.8	8	90	0	58	42	2	0	55	1.14
450393--450431	17	2.3	17	81	0	51	46	2	0	51	1.14
450460--450511	24	2.1	26	85	7	72	57	0	3	38	1.17
451518--451607	16	5.2	18	73	17	84	54	0	1	44	1.07
451524--451605	32	2.4	34	86	9	107	56	0	1	42	1.07
452398--452449	18	3.1	17	80	20	65	51	0	0	48	1.00
452370--452449	32	2.5	32	87	2	106	57	0	0	42	0.98
452404--452457	16	3.3	15	77	22	56	53	0	0	46	1.00
452656--452696	14	2.9	14	85	0	55	53	2	0	43	1.13

Tables:   1   2   3   4   5   6   7   8   9   10