genome.fa.s385.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold385
Parameters: 2 7 7 80 10 50 1000
Length:  1395621

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  6  of  10  ( 1109 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
587470--587534	28	2.4	28	78	17	73	56	0	0	43	0.99
588198--588273	31	2.6	30	80	13	88	44	2	0	52	1.14
588673--588702	2	15.0	2	92	0	51	46	0	0	53	1.00
588925--588977	24	2.3	23	83	6	63	33	0	20	45	1.52
591927--591981	19	2.6	22	80	13	71	52	1	5	40	1.35
592111--592170	27	2.2	27	82	8	68	46	1	1	50	1.21
592730--592784	18	3.1	17	76	10	56	38	1	0	60	1.08
592782--592842	22	2.8	21	85	7	68	42	0	0	57	0.98
593596--593680	41	2.0	45	82	15	108	48	2	0	49	1.14
596054--596091	19	1.9	19	89	5	58	44	0	0	55	0.99
596057--596122	29	2.4	28	78	12	64	39	1	3	56	1.24
597620--597658	19	2.1	19	85	0	51	38	0	2	58	1.12
599966--599993	14	2.0	14	100	0	56	50	7	14	28	1.69
600886--600916	6	5.2	6	100	0	62	16	16	35	32	1.91
601885--601917	15	2.1	17	88	11	52	69	0	0	30	0.88
601885--601954	21	3.4	22	73	11	67	60	0	0	40	0.97
606878--606909	2	16.0	2	100	0	64	50	0	50	0	1.00
607201--607253	17	3.0	18	78	15	58	54	0	1	43	1.11
608618--608680	28	2.0	29	82	17	74	36	0	3	60	1.13
609508--609569	32	1.9	33	90	3	99	41	11	3	43	1.56
613282--613336	27	2.1	26	86	3	74	65	3	0	30	1.10
613787--613824	19	2.0	20	85	10	53	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
613988--614026	16	2.4	16	86	0	51	61	0	0	38	0.96
619120--619210	44	2.0	45	97	2	175	25	19	13	41	1.88
620254--620294	17	2.4	17	95	0	73	24	26	19	29	1.98
620921--620999	33	2.4	32	81	8	88	40	2	1	55	1.21
620981--621024	19	2.2	20	84	15	65	29	0	0	70	0.88
620984--621023	18	2.2	19	90	4	64	27	0	0	72	0.85
621662--621728	30	2.2	31	84	5	84	34	14	1	49	1.53
622612--622681	24	2.9	24	74	18	65	64	2	2	30	1.22
622612--622666	22	2.4	24	81	6	69	65	1	1	30	1.13
622690--622724	17	1.9	19	88	11	56	45	0	0	54	0.99
622710--622755	19	2.5	19	79	6	60	56	0	0	43	0.99
626514--626563	18	2.8	18	82	8	66	52	0	0	48	1.00
627781--627819	18	2.0	21	85	14	57	28	2	2	66	1.18
628802--628829	2	14.0	2	100	0	56	50	0	0	50	1.00
629870--629911	16	2.7	16	85	3	50	33	0	0	66	0.92
633054--633078	2	12.5	2	100	0	50	0	52	0	48	1.00
634965--635008	21	2.1	21	83	8	54	40	0	0	59	0.98
634987--635040	29	1.9	28	85	7	74	51	0	0	48	1.00
636037--636065	2	15.0	2	92	7	51	51	0	0	48	1.00
636350--636398	2	24.5	2	85	0	62	46	2	4	46	1.33
638818--638922	52	2.0	52	96	0	192	31	26	4	37	1.77
638965--638994	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
642031--642066	2	19.5	2	83	16	51	44	0	0	55	0.99
642235--642271	18	2.1	18	89	0	56	67	0	0	32	0.91
645370--645394	2	12.5	2	100	0	50	52	0	0	48	1.00
650711--650748	17	2.2	17	86	9	51	57	0	0	42	0.98
650976--651051	39	1.9	39	87	10	111	35	0	6	57	1.25
651922--651960	14	2.9	14	80	3	53	48	0	2	48	1.15
656979--657020	21	2.1	19	86	8	57	50	0	0	50	1.00
664911--664963	21	2.6	21	88	8	74	60	1	3	33	1.26
666878--666902	13	1.9	13	100	0	50	40	12	16	32	1.84
669122--669175	19	2.7	21	77	5	67	40	14	14	29	1.86
673334--673397	27	2.5	26	85	7	85	64	0	0	35	0.94
673354--673384	15	2.0	16	93	6	55	67	0	0	32	0.91
673786--673831	13	3.8	12	80	13	58	69	0	6	23	1.11
673801--673834	16	2.1	16	88	0	50	70	0	2	26	1.01
675623--675661	19	2.0	20	95	5	71	20	10	15	53	1.70
681599--681623	2	12.5	2	100	0	50	48	0	0	52	1.00
684796--684834	2	19.5	2	84	10	53	48	5	46	0	1.24
686121--686169	22	2.2	23	78	10	57	46	0	0	53	1.00
686134--686173	11	3.5	12	83	13	57	45	0	0	55	0.99
686138--686188	22	2.5	20	87	12	68	49	0	0	50	1.00
686138--686191	20	2.5	22	77	17	60	50	0	0	50	1.00
686401--686449	22	2.2	23	78	10	57	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
686388--686444	28	2.0	30	82	6	73	43	1	0	54	1.10
686418--686472	11	5.2	11	72	24	55	45	0	1	52	1.11
685902--686477	280	2.1	281	93	0	974	36	7	9	46	1.64
686509--686602	9	10.0	9	71	19	59	53	2	1	43	1.19
686509--686559	26	1.9	27	88	4	77	58	0	0	41	0.98
686578--686623	15	3.3	14	76	17	51	41	4	0	54	1.20
686817--686894	15	4.9	16	76	17	65	58	0	0	41	0.98
686832--686891	18	3.6	17	75	20	56	58	0	0	41	0.98
686862--686931	37	1.9	36	85	8	97	57	0	0	42	0.99
688527--688719	5	38.6	5	64	16	53	40	2	0	57	1.10
688516--688591	29	2.8	26	77	15	73	38	1	0	60	1.05
688521--688594	19	4.0	20	73	23	63	37	1	0	60	1.05
688516--688674	16	9.2	17	69	20	73	40	0	0	59	1.02
688642--688686	7	6.6	7	80	14	58	28	0	0	71	0.87
688527--688694	17	10.0	17	69	16	75	39	1	0	58	1.05
690140--690173	3	11.3	3	93	0	59	32	2	0	64	1.08
693452--693496	22	2.0	22	87	8	65	55	0	0	44	0.99
696352--696388	2	18.5	2	100	0	74	0	48	0	51	1.00
698317--698377	15	4.1	14	73	23	54	47	0	0	52	1.00
699145--699183	2	19.5	2	100	0	78	51	0	0	48	1.00
701074--701099	2	13.0	2	100	0	52	50	0	0	50	1.00
701381--701419	12	3.2	12	82	7	51	48	0	5	46	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
701620--701648	2	14.5	2	100	0	58	48	0	0	51	1.00
702194--702236	2	21.5	2	100	0	86	48	0	0	51	1.00
702576--702636	31	2.0	30	84	9	79	54	1	0	44	1.10
703588--703669	25	3.4	24	76	11	69	39	1	2	57	1.20
704184--704233	9	5.6	9	92	0	82	76	2	22	0	0.89
704139--704234	18	5.7	18	75	16	71	66	1	31	1	1.05
704139--704234	27	3.4	27	77	9	86	66	1	31	1	1.05
704360--704407	16	2.9	16	77	20	53	47	0	0	52	1.00
707807--707875	20	3.6	19	77	11	70	42	0	0	57	0.98
707820--707888	18	3.3	22	75	21	67	39	0	0	60	0.97
707804--707880	30	2.5	30	85	6	91	42	0	0	57	0.99
712857--712888	16	1.9	17	93	6	57	62	0	0	37	0.95
713440--713485	16	2.9	16	83	0	56	34	0	2	63	1.07
714034--714077	22	2.0	22	86	0	61	38	0	0	61	0.96
714443--714488	16	2.8	17	87	9	60	63	0	0	36	0.95
715876--716039	87	1.9	85	88	5	249	43	0	4	51	1.21
715993--716044	19	2.6	20	82	14	63	50	0	0	50	1.00
715886--716070	86	2.1	87	83	6	225	45	0	3	50	1.17
716040--716108	18	3.7	19	72	16	54	56	1	0	42	1.08
716044--716086	21	2.1	21	86	4	61	48	0	0	51	1.00
715993--716110	49	2.3	50	76	16	118	53	0	0	45	1.06
716269--716316	22	2.3	21	79	10	55	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
716370--716418	19	2.6	19	78	18	57	32	0	2	65	1.04
716369--716411	16	2.6	16	85	3	50	30	0	2	67	1.03
716349--716409	30	2.0	30	81	6	70	34	0	3	62	1.12
717620--717691	35	2.1	35	97	0	135	27	19	18	34	1.95
717929--718032	52	2.0	52	100	0	208	42	15	13	28	1.85
728220--728253	15	2.2	16	89	5	52	41	26	5	26	1.78
729043--729067	3	8.3	3	100	0	50	64	0	0	36	0.94
731499--731558	2	29.0	2	80	6	66	45	5	3	46	1.41
731776--731810	13	2.6	13	90	4	52	62	0	2	34	1.10
731793--731831	18	2.2	18	90	0	60	64	0	0	35	0.94

Tables:   1   2   3   4   5   6   7   8   9   10