genome.fa.s424.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold424
Parameters: 2 7 7 80 10 50 1000
Length:  897778

Tables:   1   2   3   4   5   6   

This is table  3  of  6  ( 637 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
329145--329214	19	4.1	18	75	22	78	35	11	12	40	1.80
329166--329190	13	1.9	13	100	0	50	36	16	16	32	1.90
329147--329209	32	2.0	32	93	0	108	36	12	14	36	1.84
329252--329277	13	2.0	13	100	0	52	30	15	15	38	1.88
329232--329298	33	2.0	33	88	0	98	25	14	16	43	1.86
331629--331749	51	2.3	53	85	2	156	31	20	10	37	1.87
331740--331809	28	2.5	28	83	0	86	24	37	17	21	1.94
334073--334215	44	3.2	44	68	14	114	20	16	13	48	1.80
335191--335574	79	4.9	79	81	2	432	33	13	25	27	1.93
337884--337942	32	1.9	30	83	13	75	59	10	10	20	1.58
338223--338248	13	2.0	13	100	0	52	30	15	15	38	1.88
338203--338266	32	2.0	33	87	3	94	28	14	17	40	1.88
340793--340830	13	2.9	13	92	0	58	34	13	18	34	1.89
342909--342939	15	2.1	15	93	0	53	12	22	16	48	1.80
344742--344786	21	2.1	21	84	8	56	22	20	4	53	1.63
346668--346726	32	1.9	31	83	13	77	59	8	10	22	1.56
347764--347967	69	3.0	69	88	1	311	37	16	19	26	1.92
347813--347935	20	5.7	20	70	19	79	39	17	19	24	1.92
347953--347978	13	2.0	13	100	0	52	38	15	15	30	1.88
349517--349666	40	3.8	40	79	6	155	17	19	17	46	1.85
349787--349912	65	1.9	65	88	3	191	19	19	12	48	1.80
352490--352543	20	2.7	20	100	0	108	33	18	11	37	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
359531--359609	28	2.8	29	79	9	101	26	18	30	24	1.98
359595--359829	51	4.6	51	84	2	301	32	11	25	30	1.91
359591--359829	102	2.3	104	89	2	349	31	11	26	30	1.92
362173--362234	21	3.0	21	79	11	58	41	16	11	30	1.83
362268--362319	21	2.6	21	90	6	81	32	15	13	38	1.86
362660--362698	13	3.0	13	88	0	60	33	15	15	35	1.89
365149--365173	13	1.9	13	100	0	50	32	16	16	36	1.90
366335--366387	20	2.7	20	74	11	54	47	9	15	28	1.76
368685--369006	141	2.3	139	84	5	418	43	9	12	34	1.75
369956--369986	11	2.8	11	90	0	53	0	22	0	77	0.77
370309--370716	165	2.5	164	80	2	433	51	8	9	30	1.64
370437--370747	164	1.9	165	84	3	421	54	9	7	28	1.61
371796--372243	85	5.3	84	79	7	282	45	12	21	20	1.84
371884--372193	43	7.3	42	64	21	119	45	13	21	19	1.85
372095--372235	42	3.3	41	74	14	126	47	13	22	16	1.81
371821--372244	171	2.5	171	81	5	441	45	12	21	20	1.84
372493--372631	44	3.2	43	69	14	113	36	12	26	24	1.91
372661--372817	44	3.6	44	74	8	149	38	16	23	21	1.93
375942--376529	165	3.5	166	83	4	668	49	6	10	32	1.65
376070--376687	167	3.7	163	81	7	527	49	7	10	32	1.64
375962--376677	331	2.2	329	78	5	719	49	7	10	32	1.66
378639--378663	13	1.9	13	100	0	50	32	32	0	36	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
384907--384933	13	2.1	13	100	0	54	40	14	14	29	1.86
388025--388089	34	2.0	33	87	6	96	44	15	10	29	1.80
394248--394285	13	2.9	13	96	0	67	34	18	15	31	1.92
394397--394442	21	2.2	20	81	11	58	32	19	4	43	1.71
396458--396483	13	2.0	13	100	0	52	38	15	15	30	1.88
402554--402626	20	3.7	19	83	7	76	38	16	16	28	1.90
402554--402607	19	2.8	20	85	2	74	37	16	16	29	1.91
412574--412625	22	2.3	23	87	9	72	57	0	0	42	0.98
415344--415761	111	3.9	109	76	9	295	29	17	18	33	1.94
415542--415729	98	1.9	99	90	1	297	31	18	19	29	1.96
416134--416168	15	2.3	15	100	0	70	48	11	0	40	1.39
417469--417520	22	2.4	22	80	6	61	3	5	7	82	0.93
419816--419872	20	2.8	20	83	2	69	36	14	12	36	1.83
421046--421101	20	2.8	19	89	5	76	37	16	17	28	1.91
421171--421196	13	2.0	13	100	0	52	38	15	15	30	1.88
421153--421217	32	2.0	32	87	6	94	44	13	12	29	1.81
424553--424583	15	2.1	15	93	0	53	48	16	22	12	1.80
426667--426704	13	2.9	13	96	0	67	34	18	15	31	1.92
426816--426856	21	1.9	22	90	5	66	26	17	4	51	1.65
426816--426861	21	2.2	20	81	11	58	32	17	4	45	1.68
426759--427357	310	1.9	310	96	0	1119	32	22	8	36	1.84
429436--429491	20	2.8	19	83	5	67	39	16	16	28	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
429477--429533	21	2.7	21	100	0	114	43	10	19	26	1.83
429582--429607	13	2.0	13	100	0	52	38	15	15	30	1.88
429564--429628	32	2.0	34	90	6	107	44	15	12	27	1.82
440442--440506	20	3.6	20	73	26	81	29	12	18	40	1.87
440439--440540	33	3.1	33	94	1	170	31	12	18	37	1.89
440462--440519	13	3.9	13	73	26	53	32	13	17	36	1.89
440571--440623	20	2.6	21	84	3	72	28	16	15	39	1.89
440612--440662	20	2.5	20	87	0	66	33	15	15	35	1.90
449177--449229	20	2.7	20	91	5	81	32	18	13	35	1.90
449308--449363	20	2.8	20	79	12	62	33	14	19	32	1.92
449632--449728	48	2.0	50	91	4	162	35	5	28	30	1.79
456539--456618	20	3.9	20	77	6	79	40	12	12	35	1.81
456541--456620	42	1.9	42	86	0	115	38	12	12	36	1.81
456735--456772	20	1.9	20	100	0	76	28	15	10	44	1.80
456643--456838	90	2.2	90	87	0	284	31	11	14	42	1.81
457295--457464	87	2.0	87	85	4	236	25	22	22	30	1.99
457535--457794	37	7.4	35	72	20	186	16	23	28	31	1.97
457577--457760	68	2.7	69	82	2	246	17	25	27	30	1.97
457593--457722	31	4.0	32	73	11	102	15	26	29	29	1.96
457877--457945	34	2.0	36	85	5	97	37	15	24	21	1.93
457919--458160	44	5.9	42	68	13	146	42	16	23	17	1.88
464915--464952	20	1.9	20	88	0	58	34	15	10	39	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
466123--466259	50	2.7	51	80	3	150	31	14	11	42	1.82
466117--466243	52	2.5	52	83	2	150	30	13	11	44	1.80
469942--470099	79	2.0	79	90	2	246	26	25	14	32	1.95
470031--470148	51	2.3	51	89	2	175	27	27	13	31	1.94
470134--470203	28	2.5	28	86	4	97	28	25	15	30	1.96
470239--470312	28	2.6	28	97	0	139	21	29	22	25	1.99
470082--470393	106	2.9	107	80	4	360	25	25	16	32	1.96
472418--472456	4	9.8	4	83	10	53	20	5	0	74	1.01
478769--478804	17	2.1	17	94	0	63	11	13	30	44	1.79
482563--482633	1	71.0	1	74	0	61	87	5	5	1	0.72
482563--482625	10	6.7	9	84	10	72	87	6	4	1	0.73
482563--482636	19	4.0	18	84	10	87	86	5	6	1	0.76
483572--484040	62	7.6	62	86	4	576	24	27	18	29	1.98
486768--487004	79	3.0	79	83	2	332	28	22	13	35	1.92
486936--487054	51	2.3	51	88	0	175	27	26	13	32	1.94
487038--487109	28	2.6	28	90	0	108	27	27	16	27	1.97
486991--487189	107	1.9	107	82	4	258	28	26	13	32	1.93
487069--487248	79	2.3	79	85	0	225	28	24	12	34	1.91
487066--487295	79	2.9	79	78	3	210	28	21	13	36	1.92
491274--491345	37	1.9	37	86	5	101	18	22	29	30	1.97
491504--491577	29	2.6	29	88	0	121	24	16	25	33	1.95
491650--491832	31	5.8	30	78	11	147	22	20	26	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
491665--491832	62	2.7	62	86	4	212	23	20	25	30	1.98
491714--491953	74	3.5	72	81	8	236	26	17	25	31	1.97
491742--491954	37	6.0	37	81	9	223	25	16	25	32	1.96
491859--492235	200	1.9	200	88	0	574	27	13	23	35	1.92
492058--492154	37	2.6	37	90	3	142	25	12	25	36	1.91
497319--497442	61	2.0	61	92	0	203	35	13	26	24	1.93
497389--497641	52	4.9	52	76	5	226	33	14	25	26	1.94
497385--497841	52	9.5	48	71	14	218	31	15	25	26	1.96
497683--497845	49	3.6	47	75	19	175	29	20	25	25	1.99
497596--498118	88	6.0	88	84	2	604	30	17	24	27	1.97

Tables:   1   2   3   4   5   6