genome.fa.s424.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold424
Parameters: 2 7 7 80 10 50 1000
Length:  897778

Tables:   1   2   3   4   5   6   

This is table  4  of  6  ( 637 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
497596--498079	174	2.8	176	84	2	618	30	17	23	28	1.97
497623--498108	262	1.8	265	85	4	696	30	17	23	27	1.97
498033--498157	52	2.4	52	83	2	144	34	16	24	25	1.95
498208--498282	33	2.4	32	82	10	93	22	12	34	30	1.91
498217--498284	33	2.1	32	88	2	100	25	13	33	27	1.93
498312--498897	27	18.6	33	75	12	381	36	11	30	20	1.89
498312--498657	66	5.3	65	78	10	300	37	11	30	19	1.88
498352--498607	69	3.8	69	81	6	276	38	11	29	20	1.88
498561--498815	59	4.4	59	78	10	188	36	12	29	21	1.90
498591--498815	86	2.6	86	83	4	292	35	12	30	22	1.90
498939--498994	29	1.9	29	85	0	76	21	17	37	23	1.94
498968--499105	30	4.4	31	78	13	122	34	15	28	22	1.94
498937--499105	93	1.8	93	84	7	236	31	15	30	21	1.94
498937--499140	93	2.2	93	81	10	231	30	14	31	22	1.94
498993--499112	60	1.9	62	85	6	163	37	14	27	20	1.91
500394--500453	16	3.7	15	75	14	57	1	3	11	83	0.84
500403--500459	12	4.8	12	84	4	62	1	3	14	80	0.92
507395--507445	20	2.5	20	87	6	68	39	9	13	37	1.78
511609--511633	13	1.9	13	100	0	50	36	16	16	32	1.90
511694--511720	13	2.1	13	100	0	54	40	14	14	29	1.86
511676--511740	32	2.0	33	90	3	105	40	16	10	32	1.84
512398--512702	55	5.4	54	72	15	226	36	14	25	24	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
512376--512692	175	1.8	175	93	4	550	37	14	24	23	1.92
512664--513120	43	10.1	43	81	11	547	31	18	25	25	1.98
512611--513159	92	5.9	92	95	1	902	31	17	24	26	1.97
512778--512845	22	3.1	22	64	26	54	32	16	23	27	1.96
513166--513339	32	5.4	33	89	5	268	18	17	35	27	1.94
513330--513555	34	6.7	34	83	5	280	33	13	34	19	1.90
513333--513545	99	2.1	101	91	2	340	33	13	33	18	1.90
515002--515037	14	2.6	14	100	0	72	0	11	0	88	0.50
526729--526802	27	2.7	27	100	0	148	14	18	43	22	1.87
529023--529047	13	1.9	13	100	0	50	36	16	16	32	1.90
529108--529134	13	2.1	13	100	0	54	40	14	14	29	1.86
529090--529154	33	2.0	33	93	3	114	38	16	12	32	1.86
531006--531121	57	2.0	58	86	1	162	30	24	17	28	1.97
539491--539530	21	1.9	21	84	0	53	30	20	0	50	1.49
539814--539862	20	2.5	20	100	0	98	18	40	26	14	1.89
550738--550798	19	3.5	19	70	25	71	34	13	16	36	1.87
554564--556140	477	3.3	475	83	3	1931	32	18	13	35	1.90
556925--557230	159	1.9	159	83	4	393	33	16	10	39	1.83
557827--557871	15	3.0	15	76	0	54	44	42	0	13	1.43
565090--565162	26	2.8	26	80	16	80	35	15	15	34	1.88
565179--565243	28	2.4	27	86	2	94	33	32	15	18	1.92
565264--565602	28	12.0	27	79	6	345	29	29	16	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
565174--565589	56	7.3	56	77	10	337	30	30	15	23	1.95
565179--565590	84	4.8	85	82	6	390	30	30	15	23	1.95
566635--566711	20	3.8	20	85	0	109	32	11	11	44	1.77
568663--568975	161	1.9	161	83	1	403	29	22	11	36	1.90
568859--569089	88	2.6	87	79	4	232	31	24	10	33	1.89
570798--570841	17	2.6	16	75	10	52	63	0	0	36	0.95
570693--570965	147	1.8	150	90	2	444	48	8	1	41	1.43
571479--571574	33	2.9	33	86	4	133	30	13	14	41	1.84
571539--571595	19	2.9	19	89	2	87	31	15	17	35	1.92
571624--571692	33	2.1	33	86	5	95	31	11	18	37	1.87
573906--573953	20	2.4	20	82	6	62	66	4	8	20	1.35
579107--579148	22	1.9	22	90	0	66	42	4	28	23	1.74
579729--579782	19	2.8	20	91	2	83	29	14	18	37	1.91
579827--579879	13	4.5	13	71	26	55	32	13	16	37	1.88
579811--579879	33	2.1	33	86	5	95	31	13	17	37	1.88
584162--584281	51	2.4	51	89	0	177	28	15	29	27	1.96
584264--584365	28	3.6	28	94	2	170	28	20	29	21	1.98
584156--584498	186	1.8	186	82	1	445	33	14	25	26	1.94
584348--584466	51	2.3	51	83	0	166	35	12	22	29	1.91
584341--584657	130	2.4	130	82	3	404	36	11	23	28	1.90
587060--587114	20	2.8	20	94	0	92	43	14	14	27	1.84
587682--587810	41	3.1	40	74	12	118	41	11	27	18	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
587810--587922	42	2.6	42	78	8	122	45	15	20	19	1.86
587900--587994	45	2.3	38	84	12	109	34	14	27	23	1.94
587900--587998	38	2.4	44	85	11	129	34	14	29	22	1.93
587970--588335	61	6.1	60	81	8	363	29	20	25	24	1.99
587975--588356	122	3.2	116	81	7	446	28	21	25	25	1.99
588172--588356	55	3.2	55	84	9	235	27	20	24	27	1.99
588370--588673	107	2.7	108	86	8	398	22	21	29	26	1.99
588375--588676	55	5.4	54	86	7	396	22	21	29	26	1.99
588598--588789	94	2.0	96	84	8	255	26	18	30	24	1.98
589762--589809	1	48.0	1	78	0	51	2	4	4	89	0.64
589748--589808	25	2.4	25	81	8	61	1	9	3	85	0.78
589762--589807	12	3.5	13	79	8	58	2	4	4	89	0.66
589762--589809	25	1.9	25	91	8	80	2	4	4	89	0.64
602293--602410	51	2.3	51	85	0	146	29	14	27	27	1.95
602393--602467	28	2.7	27	84	10	98	26	21	29	22	1.99
602457--602565	51	2.1	51	89	3	166	36	10	22	31	1.87
602285--602599	158	2.0	158	87	0	450	33	13	25	27	1.93
602443--602752	130	2.4	130	86	0	449	34	11	24	29	1.90
602577--602698	51	2.4	50	82	6	147	33	13	25	27	1.93
605108--605162	20	2.8	20	80	5	67	43	14	12	29	1.82
606298--606351	22	2.5	22	82	17	69	57	0	1	40	1.09
607020--607114	48	2.0	48	83	4	120	53	1	9	35	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
610031--610056	13	2.0	13	100	0	52	30	15	15	38	1.88
610105--610181	20	3.8	20	79	8	75	28	16	14	40	1.88
612602--612639	13	2.9	13	96	0	67	31	15	18	34	1.92
614721--614751	15	2.1	15	93	0	53	12	22	16	48	1.80
618810--618835	13	2.0	13	100	0	52	30	15	15	38	1.88
618884--618960	20	3.8	20	79	8	75	28	16	14	40	1.88
619253--619308	26	2.2	26	96	0	103	41	5	23	30	1.76
620464--620545	35	2.4	34	82	8	94	35	19	13	31	1.90
621322--621347	13	2.0	13	100	0	52	38	15	15	30	1.88
623558--623604	21	2.2	22	84	3	60	55	4	17	23	1.59
625406--625436	15	2.1	15	93	0	53	48	16	22	12	1.80
627514--627550	13	2.8	13	100	0	74	29	13	16	40	1.86
629326--629350	12	2.1	12	100	0	50	56	0	20	24	1.43
630112--630137	13	2.0	13	100	0	52	38	15	15	30	1.88
647016--647043	3	9.3	3	100	0	56	67	0	0	32	0.91
650621--650769	80	1.9	80	98	0	289	53	13	9	24	1.69
651054--651110	28	2.0	28	96	0	105	31	21	3	43	1.69
655126--655153	3	9.3	3	100	0	56	32	0	0	67	0.91
655152--655179	3	9.3	3	100	0	56	0	0	32	67	0.91
655486--655525	18	2.2	18	100	0	80	27	12	27	32	1.93
656120--656305	97	1.9	100	83	5	245	48	8	6	35	1.61
659974--660087	32	3.5	32	72	8	88	8	14	31	44	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
660024--660075	16	3.2	16	83	5	61	3	19	34	42	1.69
663503--663559	20	2.8	20	94	0	96	40	10	19	29	1.85
666027--666110	21	4.0	21	78	9	73	52	5	8	33	1.56
666069--666111	22	2.0	22	90	0	68	51	11	9	27	1.69
667142--667206	19	3.8	18	75	24	77	30	12	16	40	1.86
667143--667211	32	2.2	32	94	0	120	31	11	17	39	1.85
667162--667188	13	2.1	13	100	0	54	29	14	14	40	1.86
667259--667283	13	1.9	13	100	0	50	32	16	16	36	1.90
667292--667420	52	2.5	52	96	0	240	35	18	17	27	1.94
681271--681325	20	2.8	19	76	15	58	85	12	1	0	0.68

Tables:   1   2   3   4   5   6