genome.fa.s424.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold424
Parameters: 2 7 7 80 10 50 1000
Length:  897778

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 637 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
828981--829122	58	2.5	58	83	3	162	26	14	14	45	1.82
829039--829153	58	2.0	58	82	0	140	22	13	16	46	1.82
832054--832578	166	3.2	163	84	7	675	29	9	9	51	1.66
833060--833106	21	2.3	21	85	10	62	74	2	12	10	1.16
838763--838825	33	1.9	33	87	12	94	33	19	11	36	1.87
839520--839546	14	1.9	14	100	0	54	40	7	0	51	1.30
841350--841375	13	2.0	13	100	0	52	30	15	15	38	1.88
848596--849024	165	2.6	165	82	5	492	41	13	9	35	1.75
855395--855425	16	1.9	16	93	0	53	51	9	6	32	1.60
855524--855713	73	2.6	73	81	2	211	23	25	13	37	1.91
855748--855921	36	4.9	35	72	10	124	24	26	15	33	1.95
855982--856088	36	3.1	34	74	10	101	25	28	15	29	1.96
855982--856075	32	2.8	32	77	6	98	25	28	17	28	1.97
855598--856141	220	2.5	219	77	7	541	25	27	13	34	1.93
855936--856237	141	2.1	142	85	3	394	27	27	13	31	1.94
855982--856238	73	3.7	70	73	11	206	27	26	14	31	1.95
856327--856470	52	2.8	52	82	2	155	26	20	16	36	1.93
857091--857143	20	2.6	21	81	6	72	41	11	15	32	1.82
857098--857164	20	3.2	20	80	4	71	40	10	16	32	1.82
859739--859928	80	2.4	75	77	14	195	27	22	10	40	1.86
859739--859938	79	2.6	77	78	12	219	28	21	10	40	1.85
862466--862846	88	4.3	86	74	8	302	33	12	25	28	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
862446--862846	176	2.3	175	81	8	447	32	12	25	28	1.93
866602--866626	13	1.9	13	100	0	50	32	16	16	36	1.90
866582--866646	33	2.0	33	93	0	112	35	20	10	33	1.87
866677--866703	13	2.1	13	100	0	54	40	14	14	29	1.86
871534--871575	15	2.8	15	75	13	50	30	21	14	33	1.93
874200--874252	20	2.7	20	82	2	63	30	11	15	43	1.81
880145--880184	20	2.0	20	85	14	55	32	22	0	45	1.53
882479--882532	20	2.8	20	85	2	65	29	11	18	40	1.85
886413--886437	13	1.9	13	100	0	50	32	16	16	36	1.90
886528--886552	13	1.9	13	100	0	50	32	16	16	36	1.90
889854--889918	32	2.0	34	90	6	107	29	10	15	44	1.80
889971--890025	20	2.8	20	88	5	76	29	12	16	41	1.85
891974--892016	20	2.1	20	82	4	50	11	30	41	16	1.83
892448--892486	13	3.0	13	92	0	69	35	15	15	33	1.89
894567--894597	15	2.1	15	93	0	53	12	22	16	48	1.80

Tables:   1   2   3   4   5   6

The End!