genome.fa.s438.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold438
Parameters: 2 7 7 80 10 50 1000
Length:  1141244

Tables:   1   2   3   4   5   6   7   

This is table  7  of  7  ( 809 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1040750--1041026	79	3.5	79	82	1	322	34	11	25	27	1.91
1045680--1045730	21	2.5	22	84	9	65	25	15	13	45	1.83
1046207--1046286	39	2.1	39	92	0	133	40	16	13	30	1.87
1046687--1046726	21	1.9	21	89	0	62	37	25	15	22	1.93
1065669--1065722	20	2.7	20	91	5	83	37	18	12	31	1.89
1071829--1071969	52	2.7	52	91	2	230	31	17	17	33	1.94
1071958--1071982	13	1.9	13	100	0	50	36	16	16	32	1.90
1072047--1072071	13	1.9	13	100	0	50	32	16	16	36	1.90
1072025--1072091	33	2.0	33	88	0	98	40	13	11	34	1.81
1072129--1072170	21	2.0	21	90	0	66	35	14	14	35	1.86
1072293--1072317	7	3.6	7	100	0	50	16	0	48	36	1.46
1072922--1073306	171	2.3	168	90	5	611	36	14	24	24	1.93
1072993--1073151	49	3.1	49	76	6	147	35	15	23	24	1.94
1073202--1073334	43	3.1	42	81	9	126	33	17	25	24	1.96
1073231--1073426	43	4.5	42	82	11	148	30	18	25	25	1.98
1073265--1073928	49	13.8	49	87	4	942	31	17	26	24	1.97
1073265--1073928	98	6.9	98	97	1	1199	31	17	26	24	1.97
1073933--1073997	33	1.9	34	93	3	114	18	18	35	27	1.94
1074002--1074388	96	4.0	94	82	10	432	31	12	34	21	1.91
1074034--1074421	160	2.4	155	85	9	523	30	12	35	21	1.90
1074002--1074419	194	2.1	192	84	10	530	31	12	35	21	1.90
1074002--1074571	34	17.8	32	80	10	447	31	13	32	21	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1074163--1074602	94	4.6	93	79	9	277	31	14	31	22	1.94
1074403--1074602	62	3.2	62	92	2	314	30	17	28	24	1.97
1075559--1075590	6	5.7	6	96	3	50	0	9	0	90	0.45
1075916--1076013	1	98.0	1	69	0	61	0	3	12	84	0.73
1075916--1076013	16	6.3	15	78	10	99	0	3	12	84	0.73
1075917--1076012	44	2.1	46	86	7	135	0	3	12	84	0.74
1075916--1076013	9	10.7	9	76	20	80	0	3	12	84	0.73
1082913--1083053	52	2.7	52	91	2	230	31	17	17	33	1.94
1083042--1083066	13	1.9	13	100	0	50	36	16	16	32	1.90
1083131--1083155	13	1.9	13	100	0	50	32	16	16	36	1.90
1083109--1083175	33	2.0	33	88	0	98	40	13	11	34	1.81
1083213--1083254	21	2.0	21	90	0	66	35	14	14	35	1.86
1083377--1083401	7	3.6	7	100	0	50	16	0	48	36	1.46
1092355--1092410	20	2.8	20	83	5	69	37	12	17	32	1.88
1093244--1094141	49	18.8	48	76	9	736	31	17	24	25	1.97
1093244--1094149	98	9.5	97	79	7	812	32	17	24	25	1.97
1093634--1093711	39	2.0	39	84	0	102	28	20	23	28	1.99
1093287--1094141	376	2.2	379	83	4	1017	31	17	25	25	1.97
1093873--1094137	88	3.0	89	86	2	370	30	17	24	26	1.97
1094158--1094280	57	2.1	57	85	8	160	20	17	30	30	1.96
1094146--1094280	29	4.6	30	81	10	145	20	20	29	29	1.98
1094298--1094679	60	6.3	54	77	17	305	32	14	32	19	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1094257--1094773	27	16.8	33	80	12	361	33	14	31	19	1.92
1094255--1094773	155	3.4	152	82	9	601	33	14	31	19	1.92
1094298--1094679	154	2.5	152	87	8	540	32	14	32	19	1.92
1094571--1094680	33	3.8	28	80	8	114	27	16	34	21	1.95
1094654--1094867	63	3.5	62	85	7	292	32	15	30	21	1.94
1094660--1094875	94	2.3	92	87	4	292	32	15	30	21	1.94
1099495--1099561	37	1.9	35	88	11	102	29	25	11	32	1.92
1100120--1100250	53	2.5	53	92	1	217	27	18	17	36	1.93
1100238--1100291	20	2.7	20	80	8	65	29	12	16	40	1.86
1100328--1100370	21	2.0	21	86	8	61	39	9	11	39	1.74
1102686--1102755	35	2.0	35	100	0	140	48	5	17	28	1.69
1104905--1104958	20	2.7	20	88	11	76	35	16	14	33	1.90
1105008--1105034	13	2.1	13	100	0	54	40	14	14	29	1.86
1106692--1106719	9	3.1	9	100	0	56	42	0	0	57	0.99
1111574--1111625	20	2.6	20	84	0	68	40	15	13	30	1.86
1111677--1111768	13	8.0	13	67	26	64	36	17	13	32	1.88
1111657--1111790	33	4.1	33	98	0	252	38	17	12	31	1.88
1111690--1111788	20	5.7	20	69	30	100	39	18	12	30	1.87
1117864--1117899	13	2.8	13	91	0	54	36	16	13	33	1.89
1118017--1118057	22	2.0	20	86	13	57	31	21	4	41	1.74
1118321--1118360	20	2.0	21	90	5	64	20	45	27	7	1.78
1120338--1120362	13	1.9	13	100	0	50	32	16	16	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1120350--1120401	20	2.6	20	84	0	68	38	13	17	30	1.88
1120434--1120497	20	3.7	18	74	25	66	39	20	12	28	1.89
1120453--1120477	13	1.9	13	100	0	50	32	20	16	32	1.94
1120434--1120497	33	2.0	32	93	3	110	39	20	12	28	1.89
1124255--1124491	81	3.0	81	83	6	270	33	12	24	29	1.92
1126899--1127091	91	2.1	93	84	5	250	38	13	17	30	1.89
1131744--1131809	23	3.0	22	68	14	55	65	0	0	34	0.93
1131862--1131933	20	3.5	20	66	23	58	45	8	0	45	1.33
1131843--1131931	43	2.1	43	97	0	169	43	8	0	47	1.35
1131843--1131912	23	3.2	23	68	24	69	42	8	0	48	1.33
1133420--1133554	39	3.4	39	77	7	112	38	8	11	40	1.73
1134708--1134770	33	1.9	33	93	0	108	38	11	11	39	1.76
1134835--1134862	14	2.0	14	100	0	56	50	7	14	28	1.69
1136037--1136100	33	2.0	33	87	3	94	29	10	18	40	1.85
1139189--1139389	52	3.9	52	92	1	314	30	17	17	34	1.94
1139378--1139402	13	1.9	13	100	0	50	36	16	16	32	1.90
1139443--1139509	33	2.0	33	88	0	98	40	14	11	32	1.83
1139465--1139489	13	1.9	13	100	0	50	32	16	16	36	1.90
1140104--1140563	30	15.9	29	75	11	286	29	29	17	23	1.97
1140100--1140503	57	6.9	58	75	10	304	29	28	17	24	1.97
1140309--1140503	87	2.2	88	94	1	338	32	27	18	20	1.96
1140569--1140653	42	2.0	42	86	4	118	28	25	17	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1140607--1140759	52	2.9	53	82	2	191	24	24	16	34	1.95

Tables:   1   2   3   4   5   6   7

The End!