genome.fa.s448.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold448
Parameters: 2 7 7 80 10 50 1000
Length:  1056520

Tables:   1   2   3   4   5   6   7   

This is table  3  of  7  ( 763 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
335303--335363	19	3.5	19	70	25	62	36	14	11	37	1.83
346160--346860	94	7.4	93	86	6	738	24	29	14	31	1.94
346201--346897	157	4.4	157	84	6	806	24	30	14	31	1.94
346172--346831	251	2.6	250	87	4	923	24	29	14	30	1.95
346822--347315	34	15.3	34	74	12	386	19	30	12	37	1.89
346835--346893	27	2.2	26	88	8	91	22	33	11	32	1.90
346864--347311	101	4.6	101	76	11	398	19	30	12	37	1.89
346822--347314	61	7.7	66	78	9	436	19	30	12	37	1.89
347031--347129	27	3.4	27	72	22	92	20	29	13	37	1.90
347092--347144	27	2.0	27	84	0	70	24	24	15	35	1.94
347312--347773	48	9.9	48	76	11	307	24	24	18	32	1.97
347312--347773	49	9.9	48	76	11	415	24	24	18	32	1.97
347473--347627	39	3.7	39	72	14	130	25	27	19	27	1.99
347422--347676	87	2.9	87	88	1	368	24	25	19	30	1.98
347593--347869	49	5.6	49	81	3	297	23	25	16	33	1.96
347605--347869	98	2.7	100	85	4	333	23	25	17	33	1.96
348651--348676	13	2.0	13	100	0	52	38	15	15	30	1.88
350233--350283	19	2.7	19	100	0	102	39	15	15	29	1.89
356475--356500	13	2.0	13	100	0	52	30	15	15	38	1.88
356455--356518	32	2.0	33	87	3	94	28	14	17	40	1.88
357206--357249	21	2.1	21	83	8	54	25	31	4	38	1.76
358618--358658	21	1.9	22	90	5	66	46	4	21	26	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
358779--358804	13	2.0	13	100	0	52	38	15	15	30	1.88
360874--360904	15	2.1	15	93	0	53	12	22	16	48	1.80
362708--362752	21	2.1	21	88	8	65	22	17	4	55	1.60
364965--364990	13	2.0	13	100	0	52	30	15	15	38	1.88
364945--365008	32	2.0	33	87	3	94	28	14	17	40	1.88
365754--365788	13	2.7	13	95	0	61	34	17	17	31	1.93
366754--366788	18	1.9	18	88	0	52	31	34	8	25	1.86
370284--370334	27	1.9	26	92	4	84	21	35	21	21	1.96
375921--375951	15	2.0	16	93	6	55	45	0	6	48	1.28
384491--384634	71	2.0	71	100	0	288	45	17	11	26	1.82
388973--389199	62	3.6	63	74	9	223	25	10	19	44	1.83
392222--392296	20	3.8	19	77	7	78	33	13	12	41	1.81
393222--393269	21	2.4	22	80	16	59	22	22	10	43	1.84
394445--394469	13	1.9	13	100	0	50	32	16	16	36	1.90
394538--394564	13	2.1	13	100	0	54	29	14	14	40	1.86
400752--400787	13	2.8	13	91	0	63	36	16	11	36	1.84
401218--401274	20	2.5	25	70	24	61	19	45	26	8	1.79
403368--403436	33	2.1	33	88	0	102	37	14	13	34	1.85
410705--410757	20	2.6	20	78	3	61	41	15	15	28	1.87
410789--410856	33	2.1	32	86	2	91	35	14	13	36	1.85
417017--417054	13	2.9	13	96	0	67	31	15	18	34	1.92
418917--418961	22	2.0	22	83	8	56	35	2	26	35	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
419516--419565	21	2.4	21	83	3	66	42	16	16	26	1.88
419617--419642	13	2.0	13	100	0	52	30	15	15	38	1.88
419597--419675	33	2.4	33	87	6	108	37	17	11	32	1.86
423819--423852	16	2.1	16	100	0	68	44	32	11	11	1.77
426555--426635	17	4.6	16	79	15	81	82	12	1	3	0.85
426555--426627	20	3.8	19	80	10	78	83	12	1	2	0.82
426555--426636	29	2.8	29	81	9	96	81	12	2	3	0.91
426580--426627	12	3.8	12	84	10	69	87	12	0	0	0.54
429157--429277	19	7.3	19	70	30	116	33	11	19	36	1.87
429176--429264	13	5.9	13	70	27	61	34	12	17	34	1.88
429157--429296	32	4.4	32	95	0	244	35	12	17	35	1.87
429334--429359	13	2.0	13	100	0	52	30	15	15	38	1.88
436333--436379	12	3.8	12	80	5	58	82	14	0	2	0.75
437612--437892	32	9.0	31	82	8	322	23	30	14	31	1.95
437612--437892	62	4.5	61	84	7	311	23	30	14	31	1.95
437606--437905	94	3.2	93	84	6	376	23	31	14	31	1.94
437867--438047	92	2.0	89	84	5	238	20	27	13	38	1.90
437949--438207	34	8.0	33	81	9	264	18	29	12	38	1.88
437867--438242	126	3.0	123	81	5	432	20	28	12	38	1.89
438048--438108	27	2.3	27	91	0	95	19	32	13	34	1.90
437981--438207	95	2.4	96	82	7	289	18	29	12	38	1.88
438348--438686	39	8.0	39	72	16	237	27	25	20	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
438301--438735	87	5.0	87	92	0	699	26	25	19	28	1.99
438301--439039	174	4.0	174	80	10	778	25	25	18	29	1.98
438659--439087	49	8.5	49	80	5	428	24	26	17	31	1.97
438657--439038	101	3.8	100	86	5	479	24	26	17	31	1.97
438648--439134	101	4.8	102	84	6	332	25	26	17	31	1.97
439766--439828	19	3.6	19	76	24	84	33	12	19	34	1.89
439785--439842	13	4.0	13	74	23	53	34	15	17	32	1.91
439766--439841	32	2.4	32	97	0	143	32	14	18	34	1.91
439880--439905	13	2.0	13	100	0	52	30	15	15	38	1.88
443430--443557	52	2.5	52	93	3	215	31	17	17	33	1.93
443566--443590	13	1.9	13	100	0	50	36	16	16	32	1.90
448036--448087	20	2.7	20	91	8	81	28	15	17	38	1.90
448169--448193	13	1.9	13	100	0	50	36	16	16	32	1.90
451458--451874	28	14.7	27	81	9	424	29	32	17	21	1.96
451458--451874	56	7.3	56	82	7	468	29	32	17	21	1.96
451810--451932	32	3.9	31	82	3	138	28	31	17	21	1.97
452864--452960	51	1.9	50	93	2	167	26	20	11	41	1.86
456608--456638	9	3.4	9	100	0	62	32	0	9	58	1.31
462121--462179	22	2.7	22	75	17	61	49	3	0	47	1.18
467176--467500	161	2.0	161	98	0	623	27	16	21	35	1.94
472032--472062	2	15.5	2	100	0	62	48	0	51	0	1.00
473263--473307	18	2.5	18	86	10	65	42	0	4	53	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
474984--475046	28	2.2	28	94	2	108	38	12	14	34	1.84
474992--475047	28	2.0	28	100	0	112	35	14	14	35	1.86
476701--476750	3	16.7	3	95	0	82	38	0	28	34	1.57
481907--481973	33	2.0	33	88	0	98	34	11	13	40	1.81
481927--481951	13	1.9	13	100	0	50	36	16	16	32	1.90
482014--482038	13	1.9	13	100	0	50	32	16	16	36	1.90
482047--482170	52	2.4	52	94	1	214	35	18	17	28	1.94
491434--491909	166	2.9	165	82	6	484	31	11	7	49	1.66
491598--491903	165	1.8	166	92	2	517	30	11	6	51	1.63
492111--492258	42	3.5	42	78	9	149	22	26	8	42	1.81
492144--492312	85	2.0	85	81	2	196	21	25	10	42	1.84
493349--494267	166	5.5	166	85	5	1074	29	9	8	51	1.65
493349--494267	330	2.8	331	83	5	1108	29	9	8	51	1.65
494383--494576	76	2.5	75	85	3	244	44	12	15	26	1.83
496563--496628	10	7.9	9	75	21	56	7	13	0	78	0.94
496564--496618	24	2.3	24	100	0	110	7	14	0	78	0.96
496563--496628	34	1.9	34	87	6	98	7	13	0	78	0.94
496883--496948	17	3.8	16	72	23	53	4	15	3	77	1.06
496875--496959	17	4.7	18	67	19	52	7	16	2	74	1.15
500982--501013	15	2.1	15	94	0	55	3	6	43	46	1.44
502461--502847	79	4.9	79	82	2	431	27	25	12	33	1.93
502831--503036	79	2.6	78	78	7	182	30	23	9	36	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
502881--503036	79	2.0	80	83	3	199	31	23	10	34	1.88
502620--503036	209	2.0	210	81	4	484	29	24	11	34	1.90
504034--504437	151	2.6	152	78	4	409	43	20	11	24	1.85
505675--505739	20	3.6	20	73	26	81	36	18	15	29	1.91
505695--505752	13	4.9	13	72	20	56	34	17	15	32	1.91
505674--505752	33	2.4	33	100	0	158	35	17	15	31	1.91
505674--505770	33	2.9	33	90	3	115	37	18	14	29	1.91
505834--505885	20	2.7	20	85	8	72	40	17	15	26	1.89
511932--511979	24	2.1	24	88	7	73	31	0	31	37	1.58
512639--512664	13	2.0	13	100	0	52	30	15	15	38	1.88

Tables:   1   2   3   4   5   6   7