genome.fa.s448.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold448
Parameters: 2 7 7 80 10 50 1000
Length:  1056520

Tables:   1   2   3   4   5   6   7   

This is table  7  of  7  ( 763 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
989670--989708	20	2.0	20	85	5	53	38	10	10	41	1.73
989759--989783	13	1.9	13	100	0	50	32	16	16	36	1.90
990482--990519	11	3.2	12	85	14	60	0	0	15	84	0.63
990482--990533	24	2.2	24	82	6	61	3	3	13	78	1.02
997392--997572	52	3.5	52	95	0	308	30	18	16	34	1.93
997581--997605	13	1.9	13	100	0	50	36	16	16	32	1.90
997667--997724	13	3.9	13	73	26	53	32	17	13	36	1.89
997680--997778	20	5.7	20	67	30	91	34	17	11	37	1.85
997643--997777	33	4.1	33	96	0	236	34	17	11	37	1.85
1004353--1004381	9	3.2	9	100	0	58	20	34	0	44	1.52
1006026--1006088	33	1.9	33	90	3	101	47	17	7	26	1.75
1006581--1006618	19	2.0	19	94	0	67	42	7	10	39	1.69
1007379--1007403	13	1.9	13	100	0	50	40	16	8	36	1.77
1007531--1007568	20	2.0	20	89	5	60	36	13	15	34	1.87
1016032--1016077	20	2.4	19	92	3	74	32	17	0	50	1.47
1021934--1021997	32	2.0	32	93	0	110	37	25	12	25	1.91
1022046--1022105	24	2.5	24	80	17	72	45	5	3	46	1.41
1022141--1022203	19	3.3	19	82	6	65	52	1	0	46	1.10
1023818--1023860	17	2.5	17	78	17	52	37	2	2	58	1.24
1024611--1024667	22	2.6	22	91	0	87	42	1	0	56	1.10
1030299--1030330	2	16.0	2	93	0	55	0	0	46	53	1.00
1037905--1037988	44	1.9	44	90	4	134	55	11	0	32	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1039760--1039958	79	2.5	79	81	3	204	29	16	28	25	1.97
1039913--1039989	28	2.8	28	85	0	91	22	20	33	23	1.97
1039973--1040309	52	6.4	51	68	19	167	31	12	26	30	1.93
1039906--1040311	212	1.9	212	88	3	620	30	13	27	28	1.94
1040129--1040199	27	2.6	27	88	2	97	22	21	32	23	1.98
1039859--1040251	107	3.7	105	71	11	314	29	14	27	27	1.95
1040188--1040306	51	2.3	53	84	7	145	33	10	22	32	1.89
1042672--1042697	13	2.0	13	100	0	52	38	15	15	30	1.88
1042655--1042717	33	1.9	33	86	0	90	42	17	14	25	1.87
1042737--1042804	19	3.9	18	76	23	83	38	14	11	35	1.83
1042759--1042783	13	1.9	13	100	0	50	32	16	16	36	1.90
1042740--1042802	32	2.0	32	96	0	117	36	15	12	34	1.86
1043573--1044382	55	14.4	55	86	7	928	23	20	28	27	1.99
1043619--1043708	26	3.3	26	66	19	67	20	18	33	27	1.96
1043645--1043733	29	3.2	29	65	26	82	21	19	31	28	1.97
1043596--1044381	109	7.0	110	88	5	962	22	20	28	27	1.99
1044243--1044328	27	3.1	27	62	15	68	23	18	30	27	1.98
1045346--1045418	1	73.0	1	76	0	65	0	6	5	87	0.66
1045346--1045418	16	4.7	15	81	11	85	0	6	5	87	0.66
1045354--1045419	27	2.4	28	87	7	91	0	6	7	86	0.71
1054508--1054538	2	16.0	2	93	6	55	0	48	0	51	1.00

Tables:   1   2   3   4   5   6   7

The End!