genome.fa.s448.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold448
Parameters: 2 7 7 80 10 50 1000
Length:  1056520

Tables:   1   2   3   4   5   6   7   

This is table  4  of  7  ( 763 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
512619--512686	33	2.1	32	91	8	111	35	16	16	32	1.91
514782--514834	20	2.6	21	87	6	90	41	11	16	30	1.84
519962--520013	13	3.5	13	73	26	50	32	21	13	32	1.92
520613--520850	52	4.6	52	77	6	189	31	17	25	24	1.97
520613--520903	52	5.9	48	75	9	178	32	17	25	24	1.97
520764--520903	43	3.1	43	78	11	163	32	17	26	22	1.97
520920--521043	29	4.3	30	86	7	168	16	20	34	29	1.94
520920--521043	57	2.2	57	85	7	162	16	20	34	29	1.94
521058--521205	35	4.6	32	74	15	99	34	14	29	21	1.93
521084--521140	27	2.2	26	93	3	96	36	14	28	21	1.92
521050--521167	59	1.9	60	84	6	157	37	12	32	17	1.88
521186--521325	28	5.0	28	81	4	165	22	17	28	32	1.96
521186--521323	57	2.4	57	96	1	251	21	17	28	32	1.96
522763--522843	15	5.2	15	71	19	58	2	6	8	82	0.91
522763--522804	18	2.3	19	88	12	61	2	0	9	88	0.61
522754--522843	11	8.6	10	75	10	65	3	5	8	82	0.94
535503--535528	13	2.0	13	100	0	52	30	30	23	15	1.95
536519--536997	80	6.0	80	76	8	427	30	27	11	30	1.91
536516--536998	160	3.0	159	79	7	539	29	28	10	30	1.91
541953--542038	24	3.6	24	79	0	82	33	15	25	25	1.95
541960--542089	48	2.7	48	80	4	129	31	12	26	30	1.92
542024--542082	24	2.5	24	75	10	66	28	10	28	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
544905--544946	15	2.8	15	75	13	50	38	0	2	59	1.10
545510--545611	45	2.3	45	82	3	125	37	18	14	29	1.91
545839--545882	4	10.5	4	87	7	61	22	0	2	75	0.92
545839--545892	13	4.2	13	81	9	67	24	0	1	74	0.92
549418--549461	21	2.1	21	86	0	61	36	20	22	20	1.95
550909--550954	2	23.0	2	100	0	92	50	0	50	0	1.00
552291--552321	2	15.5	2	100	0	62	48	0	0	51	1.00
558476--558528	16	3.3	16	86	0	70	33	13	9	43	1.76
560730--560758	3	9.7	3	100	0	58	68	0	0	31	0.89
561100--561134	3	11.7	3	100	0	70	68	0	0	31	0.90
561232--561283	15	3.6	16	69	26	53	59	0	0	40	0.97
561219--561290	27	2.8	26	91	6	119	56	0	0	43	0.99
565413--565497	9	10.0	9	72	23	51	37	2	0	60	1.10
565425--565466	6	7.3	6	83	5	52	35	0	0	64	0.94
565421--565490	28	2.8	23	79	16	68	38	0	0	61	0.96
566683--566707	2	12.5	2	100	0	50	52	0	0	48	1.00
567296--567320	6	4.2	6	100	0	50	48	0	0	52	1.00
570848--570982	52	2.6	52	83	5	150	31	12	8	47	1.72
573247--573288	3	13.7	3	95	5	75	66	0	0	33	0.92
586555--586608	12	4.2	12	79	9	54	85	0	9	5	0.75
586569--586609	21	2.0	21	100	0	82	82	0	9	7	0.83
588159--589080	42	22.1	42	75	6	488	17	27	16	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
588192--589053	126	6.9	125	76	4	691	17	27	16	38	1.91
588159--589080	84	11.0	84	75	5	598	17	27	16	38	1.91
591572--592045	165	2.9	161	81	10	572	28	9	9	52	1.65
592646--592693	12	3.9	12	81	10	53	75	0	22	2	0.91
592656--592712	21	2.6	22	81	10	64	75	0	17	7	1.02
592637--592711	12	6.4	12	72	17	52	74	0	18	6	1.03
593631--593972	128	2.7	128	87	3	485	33	9	11	44	1.74
599253--599732	158	3.1	157	77	8	485	33	11	25	29	1.92
599253--599769	79	6.6	78	77	7	395	32	11	26	29	1.92
599544--599958	209	2.0	209	82	3	505	32	12	26	28	1.92
599626--599899	130	2.1	129	83	3	345	31	12	26	29	1.92
599703--599800	51	1.9	51	85	0	133	33	10	25	30	1.89
599694--599821	51	2.5	50	77	5	132	34	11	25	28	1.91
599753--599960	78	2.6	79	76	8	242	32	12	25	28	1.93
610633--610687	20	2.8	20	88	5	76	32	14	12	40	1.84
617082--617203	54	2.3	54	82	1	156	49	10	19	20	1.78
618713--618813	42	2.3	44	81	6	109	15	30	20	32	1.94
618651--618813	42	3.9	42	75	4	105	18	33	20	27	1.96
618884--619182	43	7.0	43	71	3	147	20	30	16	32	1.95
618886--619276	128	3.1	127	78	5	315	19	28	17	34	1.95
618910--619272	43	8.5	42	71	7	142	19	28	18	34	1.95
620226--620827	158	3.7	162	81	8	605	26	13	9	50	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
620507--620925	163	2.5	164	84	4	450	30	14	7	47	1.71
621392--621460	20	3.5	19	81	13	68	76	0	18	4	0.94
621390--621432	15	3.1	14	80	9	52	79	0	20	0	0.74
621391--621460	33	2.1	33	82	10	81	77	0	18	4	0.93
621390--621451	7	8.9	7	76	13	56	77	0	19	3	0.90
621390--621461	11	6.0	12	71	18	60	76	0	19	4	0.95
622057--622144	43	2.0	43	100	0	176	29	4	20	45	1.71
622377--622650	128	2.2	126	86	5	383	36	10	10	42	1.74
622382--622706	128	2.6	123	81	11	348	34	11	11	42	1.76
624553--624657	53	2.0	53	88	3	158	21	12	27	38	1.90
624683--624814	59	2.2	58	80	10	144	31	12	19	36	1.90
624727--624909	95	1.9	95	83	4	235	26	12	21	39	1.89
624822--625079	119	2.2	118	84	2	320	27	12	20	39	1.89
624812--625089	59	4.7	59	81	2	299	26	12	21	38	1.90
626889--626944	23	2.4	23	84	0	76	1	26	8	62	1.35
626894--626951	23	2.8	19	79	18	64	3	27	10	58	1.47
627706--627750	19	2.4	18	88	3	63	48	11	20	20	1.79
627770--627831	22	3.0	20	72	19	54	22	0	3	74	0.96
627785--627837	25	2.1	25	86	6	72	20	0	3	75	0.96
648024--648161	52	2.7	52	87	2	190	45	10	12	31	1.76
648198--648250	20	2.7	20	87	0	70	32	16	9	41	1.81
649103--649221	51	2.3	51	87	5	161	47	12	10	30	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
649259--649330	20	3.5	20	84	1	81	30	15	11	43	1.81
650307--650407	25	3.9	26	77	16	93	58	1	2	36	1.25
650592--650758	10	16.3	10	71	19	98	49	2	0	47	1.19
650524--650808	20	14.1	20	70	22	102	48	2	0	48	1.21
650592--650811	20	10.6	21	71	18	126	49	1	0	48	1.15
650644--650811	30	5.4	30	73	14	144	50	1	0	47	1.11
650644--650811	64	2.7	64	80	13	156	50	1	0	47	1.11
650678--650811	21	6.4	21	73	20	113	50	0	0	49	1.06
654255--654307	26	2.0	26	96	0	97	41	11	24	22	1.86
660849--661075	114	2.0	113	83	8	282	39	7	9	44	1.65
661033--661094	24	2.7	23	76	16	67	33	4	6	54	1.47
663657--663700	22	2.0	22	91	8	72	47	9	0	43	1.35
664895--664922	2	14.0	2	100	0	56	50	0	0	50	1.00
665576--665601	2	13.0	2	100	0	52	50	0	0	50	1.00
666608--666663	24	2.3	23	79	11	60	25	1	8	64	1.32
667359--667399	21	2.0	21	85	9	57	39	12	9	39	1.76
667479--667615	53	2.6	53	94	1	229	36	18	18	26	1.94
667639--667679	10	4.1	10	93	0	64	24	29	4	41	1.75
667667--667723	22	2.6	23	86	8	82	28	22	10	38	1.87
669530--669557	13	2.2	13	100	0	56	53	0	0	46	1.00
669419--669652	111	2.1	109	85	7	312	41	5	4	48	1.46
669660--669756	47	2.2	43	82	12	108	35	12	3	49	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
669731--669850	60	2.0	60	93	3	206	39	4	2	54	1.33
669725--669848	31	4.1	31	72	18	100	38	5	2	53	1.38
671376--671429	21	2.6	20	77	13	56	35	3	5	55	1.41
671411--671474	30	2.1	30	83	11	78	43	1	1	53	1.19
671857--671881	2	12.5	2	100	0	50	48	0	0	52	1.00
672555--672610	29	2.0	29	85	3	78	62	0	0	37	0.95
672982--673018	2	18.5	2	100	0	74	48	0	0	51	1.00
675709--675753	19	2.4	18	82	7	54	68	0	2	28	1.01
678964--678989	3	8.7	3	100	0	52	0	0	69	30	0.89
681267--681310	17	2.4	20	82	17	60	38	2	0	59	1.10

Tables:   1   2   3   4   5   6   7