genome.fa.s45.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold45
Parameters: 2 7 7 80 10 50 1000
Length:  1408018

Tables:   1   2   3   4   5   6   7   8   

This is table  3  of  8  ( 944 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
282734--282758	13	1.9	13	100	0	50	36	8	16	40	1.77
283461--283994	293	1.8	293	90	0	872	32	19	17	31	1.94
286628--286674	21	2.2	21	92	0	76	25	19	0	55	1.43
288512--288536	10	2.5	10	100	0	50	8	12	20	60	1.57
290889--290963	20	3.8	20	78	0	78	34	12	10	42	1.77
294817--294890	20	3.7	20	83	0	103	32	13	12	41	1.81
296927--296973	16	3.1	16	79	17	55	70	10	14	4	1.31
296918--296995	37	2.1	36	81	11	88	70	10	14	5	1.31
298285--299123	27	30.5	27	89	2	1192	23	33	14	28	1.94
298286--299123	192	4.4	191	88	2	1223	23	33	14	28	1.94
299108--299734	28	21.2	28	84	4	471	29	28	18	23	1.98
299166--299491	32	10.4	32	85	3	380	30	29	19	20	1.97
299812--300010	45	4.3	46	73	14	149	21	25	18	34	1.96
299844--300020	47	3.8	47	80	6	216	20	25	19	35	1.96
300397--300470	20	3.7	20	81	0	94	32	12	12	43	1.79
318047--318096	26	1.9	26	84	8	66	30	14	18	38	1.89
318107--318973	28	30.5	28	82	6	960	30	30	16	22	1.96
319854--320018	20	7.8	20	76	12	159	30	16	12	39	1.87
319903--320017	40	2.9	40	100	0	230	33	15	13	37	1.87
319903--320020	20	5.9	20	84	7	168	32	16	13	38	1.87
320925--320965	21	2.0	22	85	9	59	21	19	9	48	1.77
326677--326737	20	3.4	20	68	29	64	32	18	16	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
326693--326717	13	1.9	13	100	0	50	32	20	16	32	1.94
326677--326753	33	2.3	33	95	0	136	32	16	18	32	1.93
329881--329924	23	1.9	23	81	9	54	29	11	22	36	1.89
331070--331108	20	2.0	20	100	0	78	30	23	10	35	1.88
332214--332280	33	1.9	36	88	8	104	40	11	13	34	1.81
340824--340936	33	3.4	33	93	0	190	43	14	13	29	1.83
340844--340955	20	6.3	20	71	26	117	43	16	14	25	1.85
340856--340916	13	5.2	13	72	22	62	42	16	13	27	1.85
341849--341915	33	2.0	33	88	0	98	29	16	28	25	1.97
345329--345683	79	4.5	79	82	4	410	32	14	25	27	1.95
345614--345789	52	3.4	52	82	6	223	32	13	25	28	1.93
345670--345919	130	1.9	130	83	4	326	32	12	25	30	1.92
345800--345931	51	2.6	52	87	3	178	33	10	24	31	1.89
348283--348310	13	2.2	13	100	0	56	39	17	14	28	1.89
348340--348440	19	5.6	19	85	13	142	38	17	11	31	1.86
348397--348421	13	1.9	13	100	0	50	32	16	16	36	1.90
354199--354258	29	2.1	29	90	0	93	38	18	13	30	1.89
356964--357034	32	2.3	30	80	4	88	22	11	18	47	1.80
356987--357102	51	2.2	53	83	4	148	25	14	14	44	1.84
358033--358107	20	3.8	20	78	0	87	34	13	12	40	1.81
358033--358110	40	2.0	39	87	2	111	34	12	12	39	1.82
370756--370895	15	9.3	15	73	14	60	51	0	0	47	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
370825--370880	21	2.7	20	86	8	85	55	0	0	44	0.99
370852--370898	16	3.0	16	90	3	78	55	0	0	44	0.99
371716--371754	3	13.0	3	100	0	78	66	0	0	33	0.92
375795--375844	25	2.0	25	88	4	73	44	0	4	52	1.20
379422--379511	20	4.5	20	79	5	110	38	10	16	34	1.82
380033--380095	24	2.6	24	79	20	69	42	0	0	57	0.99
380040--380103	26	2.5	24	85	7	83	43	1	0	54	1.09
382740--382834	48	2.0	49	83	6	122	14	22	16	46	1.84
384575--384618	20	2.1	21	83	8	54	31	6	18	43	1.76
384672--384697	13	2.0	13	100	0	52	30	15	15	38	1.88
384652--384715	33	2.0	32	84	9	85	29	14	15	40	1.86
386789--386831	20	2.1	21	86	4	61	9	27	44	18	1.80
387273--387311	13	3.0	13	92	0	69	35	15	17	30	1.91
391186--391237	21	2.5	20	78	9	59	23	9	3	63	1.41
393370--393413	20	2.1	22	91	8	74	29	9	20	40	1.83
393530--393583	20	2.8	20	88	5	76	29	16	14	38	1.89
393879--393903	13	1.9	13	100	0	50	40	20	8	32	1.81
393859--393939	33	2.5	33	91	0	135	34	17	16	32	1.92
395776--395872	41	2.4	41	100	0	194	42	4	26	26	1.73
395858--395915	29	2.0	28	83	9	73	50	3	25	20	1.64
397114--397157	23	1.9	23	81	9	54	29	11	22	36	1.89
398285--398337	20	2.6	21	84	6	72	32	18	11	37	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
398302--398341	20	2.0	20	100	0	80	30	25	10	35	1.88
399449--399515	33	1.9	36	88	8	104	40	11	13	34	1.81
408112--408200	20	4.8	20	80	18	120	43	13	14	28	1.83
408134--408200	33	2.0	33	100	0	134	43	14	14	26	1.85
408154--408181	13	2.2	13	100	0	56	42	14	14	28	1.84
409094--409160	33	2.0	33	85	0	89	28	16	29	25	1.97
410679--410718	20	2.0	21	95	5	73	32	10	12	45	1.75
412575--412929	79	4.5	79	80	5	376	32	14	25	27	1.94
412858--413035	52	3.5	51	82	11	229	34	12	24	28	1.92
412782--413167	182	2.1	183	87	3	546	33	12	25	28	1.92
412916--413165	130	1.9	130	83	9	323	33	12	24	30	1.92
413046--413166	51	2.3	52	87	6	167	33	10	23	32	1.89
413079--413178	51	2.0	51	87	0	146	37	10	23	30	1.87
415508--415535	13	2.2	13	100	0	56	39	17	14	28	1.89
415522--415563	21	2.0	21	95	0	75	30	19	7	42	1.78
415586--415648	19	3.7	18	74	24	64	36	19	12	31	1.89
415605--415629	13	1.9	13	100	0	50	32	16	16	36	1.90
415582--415650	32	2.2	32	94	0	120	36	18	11	33	1.87
419529--419561	3	11.0	3	100	0	66	33	33	0	33	1.58
423625--423650	13	2.0	13	100	0	52	30	15	15	38	1.88
423689--423764	21	3.7	21	80	3	100	28	17	11	42	1.84
423710--423782	20	3.6	20	81	3	101	31	19	13	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
423689--423782	41	2.3	41	98	0	179	29	18	12	39	1.88
426204--426242	13	3.0	13	96	0	69	35	15	17	30	1.91
426228--426306	20	3.7	20	75	18	70	45	15	13	25	1.83
428321--428351	15	2.1	15	93	0	53	12	22	16	48	1.80
432413--432438	13	2.0	13	100	0	52	30	15	15	38	1.88
432477--432552	21	3.7	21	80	3	100	28	17	11	42	1.84
432498--432570	20	3.6	20	81	3	101	31	19	13	35	1.91
432477--432570	41	2.3	41	98	0	179	29	18	12	39	1.88
434619--434678	29	2.1	29	96	0	111	38	21	13	26	1.90
437508--437625	51	2.3	52	82	1	148	28	14	14	42	1.85
438074--438110	13	2.7	14	87	8	58	62	29	0	8	1.24
440631--441283	78	8.6	74	76	9	523	29	24	10	35	1.89
440622--441283	154	4.3	152	81	8	675	29	24	10	35	1.89
448581--448645	32	2.0	32	84	3	85	40	15	16	27	1.89
452548--452666	51	2.3	51	81	8	143	31	14	26	27	1.95
452649--452722	28	2.6	28	89	0	112	27	18	31	22	1.98
452709--452982	51	5.3	51	71	13	209	29	12	28	29	1.93
452607--453017	158	2.6	158	90	1	610	31	13	27	27	1.94
454714--454754	21	2.0	21	85	9	57	39	12	9	39	1.76
454791--454847	21	2.8	20	81	5	69	40	15	14	29	1.87
454835--454971	53	2.6	53	94	1	229	37	19	17	25	1.94
454996--455026	10	3.1	10	90	0	53	22	29	6	41	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
456749--456790	21	2.0	21	85	0	57	42	4	28	23	1.74
458815--458839	13	1.9	13	100	0	50	36	16	16	32	1.90
460538--460594	21	2.8	20	81	5	69	40	15	14	29	1.87
460582--460718	53	2.6	53	92	1	220	37	19	16	25	1.93
460743--460773	10	3.1	10	90	0	53	22	29	6	41	1.78
460761--460815	21	2.5	22	94	5	103	27	25	10	36	1.89
460873--460911	13	3.0	13	92	0	69	30	15	17	35	1.91
462692--462743	19	2.6	21	87	6	72	32	13	13	40	1.83
463378--463481	42	2.5	41	78	10	113	43	9	28	18	1.81
463482--463564	42	2.0	42	85	0	112	45	14	21	18	1.84

Tables:   1   2   3   4   5   6   7   8