genome.fa.s45.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold45
Parameters: 2 7 7 80 10 50 1000
Length:  1408018

Tables:   1   2   3   4   5   6   7   8   

This is table  6  of  8  ( 944 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
905367--905405	14	2.8	14	92	0	69	30	5	15	48	1.66
916334--916386	23	2.5	21	80	14	63	20	26	3	49	1.66
917644--917895	32	7.7	31	74	13	159	13	23	21	42	1.88
917583--918103	66	8.0	66	74	9	327	15	20	20	43	1.88
917808--917913	34	3.2	33	73	17	103	14	19	24	41	1.89
917644--917882	131	1.8	131	82	4	313	13	22	21	42	1.88
917795--918110	126	2.4	128	81	6	336	15	20	20	42	1.88
917921--918010	34	2.7	31	73	18	83	14	21	18	45	1.85
917559--918103	192	2.8	191	76	10	484	15	20	20	43	1.88
919351--919376	5	5.2	5	100	0	52	19	0	0	80	0.71
929875--929933	20	3.0	20	82	9	84	35	11	23	28	1.91
930704--931004	162	1.8	164	85	2	419	27	14	18	39	1.90
932382--932515	63	2.1	63	98	0	259	21	17	26	34	1.96
935182--937324	159	13.7	156	68	10	696	35	14	19	30	1.91
941687--942618	158	6.0	158	70	10	555	37	14	18	29	1.90
943336--943607	144	1.9	144	83	4	352	36	13	19	31	1.90
947309--947364	27	2.1	27	86	0	76	19	14	35	30	1.91
947314--947371	27	2.1	27	83	0	71	22	13	34	29	1.93
950114--950196	36	2.3	37	91	2	132	19	25	24	31	1.98
950301--950354	27	2.0	28	85	10	76	27	12	25	33	1.93
950578--950640	27	2.3	28	81	10	76	22	15	23	38	1.93
950432--950749	99	3.2	99	93	0	539	23	15	26	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
950725--950792	28	2.4	28	87	0	100	19	22	30	27	1.97
954253--954508	103	2.5	102	87	3	343	31	12	27	28	1.93
965216--965620	152	2.7	152	82	1	429	36	15	18	30	1.91
967395--967777	158	2.4	159	78	3	389	37	13	17	31	1.89
967302--968613	159	8.4	155	70	13	474	35	14	18	31	1.91
965367--972524	774	9.3	768	75	10	5559	35	14	19	30	1.91
971934--973038	471	2.4	465	82	3	1322	36	14	19	30	1.91
975055--975130	12	6.9	11	75	15	52	39	2	48	9	1.49
975045--975163	42	2.8	42	93	0	202	42	1	46	9	1.46
975120--975169	18	2.8	18	81	6	57	44	2	46	8	1.44
980119--981052	469	2.0	468	85	3	1270	35	13	19	30	1.91
980106--982431	159	14.9	156	69	13	1064	36	13	18	31	1.90
980251--982459	777	2.8	773	78	7	2256	36	13	18	31	1.90
984326--984442	58	2.0	58	88	0	171	31	18	22	27	1.97
997592--997701	42	2.6	42	91	0	175	41	2	46	9	1.50
1003300--1003370	33	2.2	33	86	0	97	11	45	2	40	1.55
1003330--1003409	42	1.9	42	92	0	133	12	43	0	43	1.42
1003349--1003379	9	3.4	9	90	0	53	12	41	0	45	1.42
1003366--1003400	12	2.9	12	84	16	54	11	48	0	40	1.39
1006231--1006303	29	2.5	29	90	0	110	30	17	28	23	1.97
1007535--1007907	154	2.4	157	80	8	384	31	18	14	35	1.91
1007541--1010406	159	18.4	158	69	12	808	30	18	13	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1008985--1010406	781	1.8	775	81	6	1777	31	18	14	36	1.90
1008985--1010504	778	2.0	772	80	6	1759	31	18	14	35	1.90
1012176--1012231	12	4.7	12	82	12	71	39	0	50	10	1.37
1012173--1012231	24	2.5	24	97	0	109	40	0	49	10	1.37
1012173--1012240	24	2.8	25	88	6	104	44	0	44	11	1.40
1012206--1012268	21	3.0	22	68	21	53	46	0	42	11	1.39
1013749--1013793	22	2.0	22	82	0	54	55	0	33	11	1.35
1018126--1018736	316	1.9	311	80	6	689	35	14	19	31	1.91
1017345--1019058	779	2.2	775	81	5	1906	35	14	18	31	1.91
1018947--1019166	111	2.0	110	83	5	273	37	16	16	29	1.90
1019847--1020197	163	2.2	159	82	7	408	35	12	20	31	1.90
1020573--1020923	156	2.3	149	78	10	354	36	13	16	33	1.88
1025932--1025996	18	3.3	18	67	29	51	9	49	1	40	1.44
1025935--1026053	42	2.8	42	92	0	193	9	45	1	43	1.46
1034740--1034819	28	2.9	28	71	14	76	58	8	21	11	1.59
1035613--1035642	2	15.0	2	100	0	60	50	0	0	50	1.00
1046855--1046915	9	6.1	9	75	17	50	13	40	0	45	1.43
1046828--1046945	42	2.8	42	88	3	157	11	42	0	44	1.47
1050354--1050429	12	6.9	11	75	15	52	39	2	48	9	1.49
1050353--1050438	24	3.8	24	72	17	85	41	2	45	10	1.51
1050344--1050462	42	2.8	42	92	0	193	42	2	46	8	1.47
1058583--1058649	22	2.9	23	82	6	73	16	13	4	65	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1058622--1058663	14	3.3	13	84	12	52	14	7	4	73	1.21
1058630--1058663	14	2.4	14	95	0	59	11	8	5	73	1.24
1062714--1062751	18	2.1	18	90	0	58	47	0	36	15	1.46
1064935--1065265	178	1.9	178	84	4	452	34	14	19	31	1.92
1070186--1070298	21	5.5	19	72	18	63	12	46	0	41	1.41
1070217--1070275	9	6.9	9	77	11	70	11	45	0	42	1.41
1070192--1070307	42	2.8	42	91	0	178	12	44	0	43	1.41
1072151--1074043	781	2.4	768	77	8	1831	36	13	18	31	1.90
1073850--1074258	159	2.6	153	80	6	407	37	14	18	30	1.90
1074554--1075748	154	7.6	153	67	15	407	36	14	18	30	1.91
1073032--1075025	925	2.1	933	79	7	2095	36	13	18	30	1.90
1074554--1075833	158	8.2	154	67	14	449	36	14	18	30	1.91
1073984--1077183	778	4.1	772	74	10	2324	36	13	19	30	1.91
1077600--1077681	28	3.0	27	72	16	78	10	20	8	59	1.57
1088210--1088234	13	1.9	13	100	0	50	40	16	12	32	1.84
1088215--1088253	20	2.0	20	94	0	69	43	17	10	28	1.82
1091187--1092077	160	5.7	155	70	12	393	35	14	20	29	1.93
1091180--1092084	152	5.8	153	71	11	580	34	14	20	29	1.93
1092648--1093222	309	1.9	310	79	6	666	33	13	19	32	1.91
1093298--1095270	159	12.6	160	69	13	719	35	14	19	31	1.91
1093320--1095298	932	2.1	937	81	5	2286	35	13	19	31	1.91
1099779--1099805	13	2.1	13	100	0	54	29	14	14	40	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1099841--1099909	32	2.1	33	94	2	122	36	17	11	34	1.86
1099865--1099889	13	1.9	13	100	0	50	32	16	16	36	1.90
1100650--1100915	98	2.8	92	90	3	388	29	19	25	24	1.99
1100650--1100920	49	5.7	49	75	6	268	29	19	26	24	1.98
1100946--1101076	28	4.6	28	82	9	174	19	16	31	32	1.94
1100925--1101076	57	2.6	57	89	6	225	23	17	29	30	1.97
1102511--1102590	14	6.1	13	81	13	83	0	0	16	83	0.64
1102525--1102588	12	5.4	12	80	15	71	0	0	12	87	0.54
1102518--1102590	27	2.7	27	82	17	91	0	0	15	84	0.61
1102526--1102586	7	8.9	7	83	16	83	0	0	13	86	0.56
1102524--1102588	1	65.0	1	75	0	58	0	0	12	87	0.54
1116430--1116483	20	2.6	21	94	2	92	29	11	14	44	1.80
1116523--1116547	13	1.9	13	100	0	50	36	16	16	32	1.90
1116590--1116706	20	6.7	19	75	22	114	35	17	11	35	1.86
1116604--1116632	13	2.1	14	93	6	51	27	17	13	41	1.87
1116585--1116685	32	3.1	32	91	1	166	35	17	10	35	1.85
1117937--1117974	19	2.0	19	94	0	67	34	26	18	21	1.96
1119185--1119221	19	2.1	18	90	10	58	51	16	13	18	1.76
1124009--1124289	153	1.8	153	79	7	329	35	14	17	32	1.90
1125350--1128173	158	18.1	156	68	13	1066	36	13	18	31	1.89
1123900--1128168	780	5.5	771	77	9	3587	36	13	18	31	1.90
1127511--1128173	318	2.1	318	79	4	712	37	13	17	30	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1128258--1128297	12	3.2	12	93	6	71	50	12	7	30	1.68
1128257--1128295	13	3.1	13	92	7	71	46	15	7	30	1.74
1133895--1133959	15	4.6	15	69	20	50	12	16	7	63	1.51
1134985--1135480	258	1.9	252	83	4	636	38	14	16	29	1.89
1136547--1136769	80	2.8	80	82	2	259	34	12	25	28	1.92
1136707--1136821	52	2.2	53	87	3	162	35	11	23	29	1.90
1136654--1136900	132	1.9	129	86	5	354	36	11	23	28	1.90
1136754--1136926	79	2.2	80	86	3	233	34	11	26	27	1.91
1139264--1139386	51	2.4	51	86	2	167	42	12	16	29	1.84
1140938--1141003	28	2.4	28	94	0	114	30	16	25	27	1.97

Tables:   1   2   3   4   5   6   7   8