genome.fa.s45.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold45
Parameters: 2 7 7 80 10 50 1000
Length:  1408018

Tables:   1   2   3   4   5   6   7   8   

This is table  8  of  8  ( 944 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1290615--1290705	13	6.9	13	68	28	59	37	14	18	29	1.90
1290628--1290724	20	5.6	19	69	30	83	39	14	17	28	1.89
1290614--1290724	33	3.4	33	98	0	213	38	14	18	28	1.90
1293933--1293993	20	3.0	20	76	4	70	47	13	9	29	1.74
1294016--1294073	20	2.8	21	84	5	73	34	13	12	39	1.82
1300313--1300360	20	2.4	20	82	0	60	8	14	0	77	0.99
1301083--1301576	28	17.6	29	82	6	556	23	16	29	30	1.96
1301083--1301576	86	5.8	85	82	7	562	23	16	29	30	1.96
1308541--1308595	20	2.8	20	94	5	94	36	14	12	36	1.84
1319234--1319259	13	2.0	13	100	0	52	30	15	15	38	1.88
1319300--1319352	20	2.7	20	96	0	97	28	18	13	39	1.88
1319335--1319365	13	2.4	13	100	0	62	29	16	16	38	1.90
1319216--1319404	53	3.6	53	70	16	160	30	17	13	37	1.89
1319315--1319383	33	2.1	33	94	0	120	28	17	13	40	1.87
1319348--1319404	20	2.8	20	79	12	64	29	17	12	40	1.86
1321723--1321800	41	1.9	41	83	0	102	32	20	8	38	1.84
1321832--1322066	79	2.9	80	80	5	260	28	25	13	33	1.93
1321832--1322066	81	2.9	79	77	8	244	28	25	13	33	1.93
1322892--1322917	13	2.0	13	100	0	52	30	15	15	38	1.88
1325485--1325523	13	3.0	13	100	0	78	38	15	15	30	1.88
1327598--1327628	15	2.1	15	93	0	53	12	22	16	48	1.80
1329431--1329475	22	2.1	21	84	8	56	22	17	4	55	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1331690--1331715	13	2.0	13	100	0	52	30	15	15	38	1.88
1338098--1338651	55	9.4	62	81	9	525	25	25	20	29	1.99
1338260--1338651	115	3.4	114	82	5	463	27	25	20	26	1.99
1338574--1338789	94	2.3	92	84	8	269	26	27	18	26	1.99
1338760--1338874	60	1.9	60	92	3	194	26	26	18	28	1.98
1338788--1338968	94	1.9	97	86	3	260	24	26	18	30	1.98
1338879--1339069	60	3.1	60	80	5	220	24	28	19	26	1.99
1338883--1339416	61	8.9	60	72	11	312	24	28	19	27	1.99
1339119--1339415	61	4.9	60	87	4	418	25	26	20	27	1.99
1339432--1339533	42	2.4	42	83	4	116	14	26	12	46	1.81
1339432--1339655	119	1.9	117	82	10	278	20	26	12	40	1.88
1340333--1340370	20	1.9	20	100	0	76	36	13	10	39	1.79
1340419--1340526	20	5.8	19	76	21	104	27	18	13	39	1.89
1340456--1340486	13	2.4	13	100	0	62	29	16	16	38	1.90
1340436--1340504	33	2.1	33	100	0	138	27	18	14	39	1.90
1340335--1340525	53	3.6	53	70	17	164	29	17	14	38	1.89
1342739--1342917	51	3.5	51	83	3	220	28	24	11	35	1.90
1342857--1343127	79	3.4	77	80	9	296	29	24	12	33	1.92
1347563--1347949	28	13.7	28	82	9	423	30	28	18	22	1.97
1347557--1347993	57	7.7	55	82	10	454	30	28	18	22	1.97
1347557--1347968	142	2.9	137	83	8	535	31	29	17	22	1.97
1347991--1348426	49	8.9	49	80	6	402	25	24	16	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1348027--1348430	101	4.0	101	83	3	431	25	24	15	35	1.94
1348030--1348415	150	2.6	153	85	3	489	25	23	16	34	1.95
1353802--1353864	32	2.0	32	87	0	90	38	11	15	34	1.83
1353834--1353880	19	2.6	18	93	6	78	31	12	19	36	1.89
1353906--1353947	21	2.0	21	95	0	75	40	9	21	28	1.84
1353934--1353959	13	2.0	13	100	0	52	30	15	15	38	1.88
1356476--1356647	51	3.4	48	79	10	173	28	29	11	30	1.92
1356580--1356886	79	3.9	76	79	8	314	26	27	14	31	1.95
1362840--1362873	17	2.0	17	94	0	59	8	0	5	85	0.75
1363785--1363839	8	6.9	8	85	6	76	87	9	3	0	0.66
1363775--1363840	16	4.1	16	76	3	69	86	7	6	0	0.71
1363775--1363870	31	3.1	31	81	11	115	83	7	8	1	0.86
1363775--1363870	30	3.1	31	79	14	108	83	7	8	1	0.86
1363776--1363844	25	2.8	25	86	2	95	85	7	7	0	0.74
1363775--1363840	1	66.0	1	75	0	51	86	7	6	0	0.71
1363795--1363870	25	2.8	28	86	9	86	82	7	7	1	0.88
1365128--1366099	34	30.6	33	73	15	475	21	30	11	35	1.89
1365122--1366483	61	22.0	61	72	16	463	21	30	11	35	1.90
1365128--1365752	95	6.6	93	70	20	334	22	31	11	35	1.89
1365705--1365797	27	3.4	27	83	0	114	21	25	17	35	1.95
1365559--1365970	217	1.9	218	86	2	596	20	29	12	37	1.89
1365863--1366035	96	1.8	94	82	10	226	20	30	12	36	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1365776--1366099	164	2.0	163	86	3	454	20	30	11	37	1.88
1366141--1366593	27	15.7	27	66	20	152	22	30	12	34	1.91
1366167--1366281	34	3.6	34	72	20	120	19	31	12	37	1.88
1366278--1366337	31	1.9	32	87	12	90	18	28	13	40	1.88
1366141--1366621	178	2.8	169	80	7	495	22	30	12	34	1.91
1366436--1366532	48	2.0	48	91	0	158	22	31	13	31	1.93
1366485--1366623	61	2.3	60	82	6	165	23	31	11	33	1.90
1366664--1366877	32	6.7	31	81	7	234	30	32	18	18	1.95
1366664--1366877	96	2.2	96	84	7	267	30	32	18	18	1.95
1366883--1367159	49	5.8	48	71	12	178	27	24	15	32	1.95
1367039--1367314	52	5.2	52	73	13	193	24	25	13	36	1.92
1367027--1367176	49	2.9	50	80	7	169	23	25	14	36	1.93
1368798--1368840	13	2.9	15	80	20	54	69	25	2	2	1.12
1368798--1368838	21	1.9	22	90	5	66	70	24	2	2	1.11
1371424--1371463	16	2.3	17	87	12	55	20	20	0	60	1.37
1377148--1377176	6	4.8	6	100	0	58	68	0	0	31	0.89
1377166--1377217	19	2.7	19	84	0	59	63	1	3	30	1.23
1377336--1377419	22	3.8	22	80	9	64	42	4	9	42	1.58
1377684--1377764	35	2.3	36	89	2	119	49	4	1	44	1.32
1377717--1377841	55	2.3	55	86	5	166	52	4	3	40	1.36
1378008--1378049	20	2.2	19	84	12	59	38	11	7	42	1.69
1378321--1378371	22	2.5	20	83	6	66	39	5	9	45	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1389569--1389621	20	2.7	20	85	2	81	45	11	13	30	1.78
1389636--1389712	20	3.8	20	80	10	68	36	14	12	36	1.84
1392850--1392900	19	2.6	19	81	3	57	29	17	13	39	1.88
1393381--1393425	23	2.0	23	82	8	56	31	8	22	37	1.85
1394163--1394229	33	2.0	33	88	0	98	34	11	14	38	1.84
1394183--1394212	13	2.2	14	94	5	53	33	13	16	36	1.88
1394272--1394296	13	1.9	13	100	0	50	32	16	16	36	1.90
1394305--1394433	52	2.5	52	97	0	240	34	17	17	29	1.94
1399317--1399365	25	1.9	26	83	4	64	34	0	2	63	1.06
1399294--1399365	29	2.7	27	81	12	85	34	0	1	63	1.03
1399463--1399503	18	2.3	18	100	0	82	36	9	17	36	1.82
1399643--1399667	13	1.9	13	100	0	50	32	16	16	36	1.90
1399655--1399706	20	2.6	20	87	0	77	40	13	15	30	1.86
1401355--1401388	9	3.8	9	92	0	50	35	0	38	26	1.57
1405865--1405917	20	2.7	20	100	0	106	26	15	18	39	1.90
1406095--1406135	22	2.0	21	86	13	59	31	21	4	41	1.74

Tables:   1   2   3   4   5   6   7   8

The End!