genome.fa.s470.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold470
Parameters: 2 7 7 80 10 50 1000
Length:  597437

Tables:   1   2   3   4   5   6   

This is table  2  of  6  ( 626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
131574--131610	19	2.0	18	89	5	56	37	2	0	59	1.12
132917--132952	18	1.9	19	88	5	56	41	2	5	50	1.40
133726--133759	14	2.5	13	86	9	50	26	0	2	70	1.01
135392--135429	15	2.4	16	86	8	60	50	0	0	50	1.00
136397--136483	33	3.0	28	74	19	70	47	3	1	48	1.26
136410--136472	32	2.0	32	84	12	85	46	3	0	50	1.17
136561--136608	25	2.0	23	88	12	69	45	4	2	47	1.33
136805--136830	10	2.6	10	100	0	52	7	0	0	92	0.39
138308--138349	2	22.0	2	85	9	61	50	0	2	47	1.14
138853--138889	3	12.7	3	94	5	67	29	0	0	70	0.88
139074--139125	27	1.9	27	84	7	70	51	0	0	48	1.00
139095--139138	21	2.0	23	91	8	74	50	0	0	50	1.00
139353--139399	23	2.0	23	87	8	67	51	0	4	44	1.21
141088--141147	20	3.0	20	79	13	54	45	0	3	51	1.17
141588--141647	18	3.5	18	80	6	63	53	0	0	46	1.00
142120--142210	26	3.5	25	84	12	112	58	1	4	36	1.25
142091--142205	26	4.1	27	74	17	92	56	0	4	38	1.25
142385--142443	29	2.0	31	86	6	86	50	1	3	44	1.28
142685--142720	2	18.0	2	100	0	72	50	0	0	50	1.00
143680--143715	2	18.0	2	100	0	72	50	0	0	50	1.00
147885--147924	15	2.5	15	88	8	53	17	0	0	82	0.67
148773--148847	21	3.4	21	75	17	73	58	0	1	40	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
151258--151324	26	2.6	26	77	13	75	41	1	0	56	1.08
151266--151324	26	2.2	27	79	11	77	40	0	0	59	0.97
151549--151652	12	9.1	11	67	19	52	43	0	0	54	1.13
151919--151957	12	3.1	12	82	13	51	51	0	2	46	1.14
151920--151958	19	2.0	20	90	10	62	51	0	2	46	1.14
152194--152509	103	3.1	102	94	1	526	23	24	14	37	1.92
155758--155800	17	2.5	17	82	17	54	30	2	0	67	1.03
156942--156991	5	9.4	5	80	10	55	64	0	0	36	0.94
156942--156984	11	4.0	11	82	17	63	65	0	0	34	0.93
156942--156985	16	2.8	16	85	0	61	63	0	0	36	0.95
157150--157180	16	1.9	16	93	0	53	48	0	0	51	1.00
157412--157475	15	4.4	15	82	7	71	35	0	0	64	0.94
157456--157494	18	2.1	19	85	4	53	23	0	0	76	0.78
158363--158414	16	3.2	17	74	25	58	34	0	1	63	1.06
158355--158432	31	2.5	31	79	8	86	34	0	3	61	1.14
158408--158468	22	2.7	21	83	16	70	24	1	4	68	1.18
158856--158884	14	2.0	15	93	6	51	75	0	0	24	0.80
166039--166078	2	20.0	2	100	0	80	50	0	0	50	1.00
166503--166541	2	19.5	2	100	0	78	48	0	0	51	1.00
167026--167055	8	3.8	8	100	0	60	80	0	0	20	0.72
167025--167067	8	4.9	9	88	8	54	76	0	0	23	0.78
167023--167076	10	5.6	10	80	10	51	77	0	0	22	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
167888--167953	19	3.5	18	83	12	71	71	0	0	28	0.87
167888--167953	9	7.0	9	80	13	71	71	0	0	28	0.87
167895--167986	10	9.4	10	74	15	59	66	0	0	33	0.92
167906--167985	9	9.3	9	78	17	55	67	0	0	32	0.91
167891--167989	45	2.2	46	80	5	112	66	0	0	33	0.92
168943--168999	23	2.5	22	81	10	71	40	14	3	42	1.62
169510--169572	28	2.3	28	79	15	78	44	0	0	55	0.99
170627--170659	16	2.0	17	88	5	50	36	0	0	63	0.95
171526--172379	432	2.0	435	82	6	1061	23	11	24	40	1.88
175915--175955	21	2.0	21	100	0	82	4	31	9	53	1.55
177541--177597	18	2.9	19	72	27	57	56	0	1	42	1.10
178439--178468	13	2.3	13	94	0	51	60	0	0	40	0.97
179090--179123	18	1.9	18	88	5	52	38	2	2	55	1.30
179238--179291	26	2.2	24	93	6	90	37	0	0	62	0.95
179246--179292	12	3.8	12	81	10	58	38	0	0	61	0.96
179250--179329	26	3.0	26	81	1	79	45	0	1	53	1.08
179277--179329	27	2.0	26	85	3	70	49	0	1	49	1.12
179661--179707	21	2.3	20	85	10	60	34	0	0	65	0.93
179752--179789	20	2.0	20	89	5	60	47	2	0	50	1.15
180068--180113	20	2.2	21	85	14	69	45	0	0	54	0.99
180099--180151	20	2.6	20	78	3	61	56	0	0	43	0.99
180823--180878	26	2.2	26	100	0	112	55	17	3	23	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
181076--181135	30	2.0	30	96	0	111	43	25	0	31	1.55
181480--181504	2	12.5	2	100	0	50	52	0	0	48	1.00
182604--182644	13	3.2	13	85	0	55	48	0	0	51	1.00
182709--182822	48	2.4	48	100	0	228	46	0	12	41	1.41
184197--184237	21	1.9	22	85	5	57	58	0	0	41	0.98
187455--187502	24	2.0	25	84	12	64	31	12	10	45	1.76
187495--187529	16	2.1	16	89	5	52	42	11	2	42	1.55
187900--187943	20	2.2	20	100	0	88	40	20	18	20	1.91
188115--188218	27	3.7	27	72	20	79	42	0	0	56	1.05
189482--189523	22	1.9	22	85	9	59	47	0	0	52	1.00
190882--190909	2	14.0	2	100	0	56	50	0	0	50	1.00
191081--191157	32	2.3	33	80	17	88	49	1	3	45	1.28
191167--191212	21	2.3	20	85	10	60	63	0	2	34	1.07
193997--194035	20	1.9	21	89	5	62	43	2	0	53	1.14
195267--195303	19	2.1	19	85	14	53	45	0	0	54	1.00
195559--195604	15	2.9	15	78	12	56	45	0	0	54	0.99
195562--195615	17	2.9	18	78	13	56	40	0	0	59	0.98
195582--195637	11	4.8	11	80	14	60	33	0	0	66	0.92
195576--195639	20	3.2	21	74	10	55	37	0	0	62	0.95
198598--198626	14	2.0	15	93	6	51	37	0	0	62	0.96
198600--198640	21	2.0	21	90	9	66	36	0	0	63	0.95
198886--198958	24	3.0	24	72	22	62	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
198940--198999	14	4.4	14	76	16	54	60	0	0	40	0.97
198937--198994	6	9.0	6	76	14	53	60	0	0	39	0.97
199558--199628	20	3.6	20	75	7	65	47	0	0	52	1.00
199578--199639	26	2.4	26	81	5	72	46	0	0	53	1.00
200712--200743	16	2.1	15	94	5	55	68	0	0	31	0.90
200837--200892	28	2.0	28	89	6	87	44	0	0	55	0.99
201359--201385	2	13.5	2	100	0	54	0	48	0	51	1.00
201385--201412	2	14.0	2	100	0	56	50	0	0	50	1.00
201476--201527	13	4.2	13	70	9	54	51	0	3	44	1.19
201500--201538	14	2.9	13	77	7	51	53	0	5	41	1.23
201638--201682	22	2.0	22	95	0	81	22	11	4	62	1.46
201958--201982	10	2.5	10	100	0	50	72	0	0	28	0.86
202420--202454	16	2.2	16	89	0	52	34	0	0	65	0.93
202801--202834	11	2.9	12	86	8	52	82	0	8	8	0.85
205947--205980	15	2.3	15	100	0	68	29	20	23	26	1.99
206640--206679	19	2.0	21	90	9	66	25	0	0	75	0.81
206639--206696	24	2.3	25	88	5	82	27	0	0	72	0.85
206648--206693	19	2.5	19	79	10	51	28	0	0	71	0.86
206640--206698	27	2.1	29	81	12	70	25	0	0	74	0.82
210683--210768	40	2.2	39	81	12	95	36	1	8	54	1.38
210746--210785	19	2.2	19	91	8	66	55	0	5	40	1.22
210886--210940	14	4.2	13	79	4	58	43	0	1	54	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
210914--211011	39	2.6	37	75	15	110	40	1	6	52	1.33
210914--211004	37	2.5	35	79	12	101	40	1	6	51	1.35
210901--211025	44	3.0	41	76	15	125	40	0	7	52	1.35
211241--211304	29	2.2	29	88	0	101	53	4	0	42	1.22
211525--211564	2	20.0	2	100	0	80	50	0	0	50	1.00
213989--214015	2	13.5	2	100	0	54	51	0	0	48	1.00
214265--214385	33	3.6	33	74	15	97	54	0	2	42	1.13
214271--214328	22	2.6	22	76	12	57	51	0	3	44	1.18
214307--214386	10	8.7	9	70	22	51	53	0	2	43	1.14
214679--214715	11	3.4	11	84	0	56	54	0	0	45	1.00

Tables:   1   2   3   4   5   6