genome.fa.s470.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold470
Parameters: 2 7 7 80 10 50 1000
Length:  597437

Tables:   1   2   3   4   5   6   

This is table  5  of  6  ( 626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
441227--441304	25	3.1	24	75	14	77	15	1	2	80	0.88
443607--443641	14	2.7	13	87	12	54	40	0	0	60	0.97
443591--443652	21	3.0	19	80	20	63	43	0	0	56	0.99
445063--445101	20	2.0	20	85	10	53	58	2	0	38	1.12
453654--453714	1	61.0	1	80	0	59	88	4	6	0	0.63
453652--453710	29	2.0	30	90	3	93	84	5	10	0	0.76
453655--453714	16	3.6	16	81	4	75	88	5	6	0	0.63
456957--457035	32	2.4	32	81	6	88	32	26	24	16	1.96
457711--457759	18	2.8	18	84	9	57	32	0	2	65	1.04
457816--457858	11	3.7	11	76	11	50	32	4	0	62	1.15
457816--457873	24	2.3	24	79	5	62	36	3	0	60	1.14
458677--458714	4	9.2	4	88	5	58	78	0	21	0	0.74
458677--458739	25	2.5	26	87	7	87	79	0	19	1	0.82
458679--458735	17	3.4	17	80	2	71	78	0	19	1	0.83
458813--458858	12	4.0	12	83	5	51	26	0	4	69	1.07
459492--459539	22	2.2	21	77	7	51	72	0	25	2	0.95
459490--459542	17	3.1	17	83	8	54	69	0	28	1	0.99
459488--459534	22	2.1	22	88	4	67	72	0	27	0	0.85
459487--459546	23	2.7	21	80	17	59	70	0	28	1	0.97
460071--460103	15	2.1	17	88	11	52	75	3	21	0	0.93
460612--460669	17	3.6	16	81	9	64	46	1	0	51	1.11
460668--460727	30	2.0	30	87	12	88	60	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
467592--467736	19	7.8	18	68	16	73	55	0	0	42	1.09
467573--467668	39	2.4	40	83	11	117	57	0	1	41	1.06
467709--467742	17	2.0	17	94	0	59	67	0	0	32	0.91
467924--467964	2	20.5	2	100	0	82	48	0	0	51	1.00
470105--470165	16	3.8	16	73	16	54	26	11	9	52	1.68
470203--470227	13	1.9	13	100	0	50	44	0	0	56	0.99
471881--471952	32	2.2	33	87	2	110	43	0	1	55	1.08
475087--475121	14	2.7	13	87	12	54	40	0	0	60	0.97
475635--475681	22	2.3	20	74	19	53	38	0	0	61	0.96
476361--476408	19	2.4	19	82	6	60	29	4	4	62	1.32
482071--482107	18	2.0	18	89	5	56	75	0	0	24	0.80
483311--483382	35	2.1	35	89	0	108	34	8	13	43	1.75
485422--485512	35	2.6	35	80	0	101	32	8	14	43	1.76
489631--489657	2	13.5	2	100	0	54	0	48	0	51	1.00
490059--490170	16	6.7	15	67	21	55	43	0	1	54	1.10
490156--490187	12	2.6	13	85	14	50	46	0	0	53	1.00
491644--491675	2	16.0	2	100	0	64	50	0	0	50	1.00
494481--494541	27	2.2	27	80	13	63	57	0	0	42	0.98
494785--494837	14	3.8	14	76	18	56	56	3	0	39	1.17
494785--494828	15	3.0	14	80	9	52	59	2	0	38	1.10
494944--494991	22	2.2	21	82	10	53	50	2	2	45	1.25
494947--494990	14	2.9	15	83	16	56	50	2	2	45	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
495606--495662	23	2.6	23	83	8	73	35	0	5	59	1.20
496299--496388	32	2.9	31	82	9	112	53	2	1	43	1.20
496310--496354	21	2.0	22	83	8	56	53	0	0	46	1.00
496301--496388	16	5.7	16	68	16	69	53	2	1	43	1.20
496725--496800	20	3.9	19	78	10	73	39	2	0	57	1.12
496735--496804	22	3.2	21	84	8	70	40	1	0	58	1.07
496745--496841	34	2.9	34	73	11	67	37	1	0	61	1.03
499487--499537	2	25.5	2	95	0	93	47	0	52	0	1.00
505340--505574	117	2.0	117	94	0	416	31	18	22	27	1.97
512084--512126	21	2.0	21	81	0	50	51	0	0	48	1.00
513075--513112	19	2.0	19	85	10	51	36	0	5	57	1.21
513779--513812	17	2.0	17	88	11	52	32	0	2	64	1.08
514287--514328	19	2.4	16	88	11	57	61	0	0	38	0.96
514296--514351	20	2.7	20	73	15	51	57	0	0	42	0.99
514432--514469	8	4.4	9	90	6	53	71	0	0	28	0.87
514435--514466	8	4.0	8	100	0	64	75	0	0	25	0.81
514786--514843	13	4.6	13	70	22	52	34	0	0	65	0.93
514785--514849	17	3.8	16	84	15	78	33	0	0	66	0.92
515405--515465	20	3.0	20	79	9	70	31	1	3	63	1.20
515405--515466	21	3.0	21	77	15	67	30	1	3	64	1.19
515556--515605	12	3.8	13	74	15	50	42	0	0	58	0.98
516220--516267	20	2.4	20	85	0	60	47	6	6	39	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
516613--516656	19	2.3	18	85	14	54	29	0	9	61	1.27
519507--519821	156	2.0	156	95	0	567	39	17	20	23	1.93
523652--523729	39	2.0	39	82	9	97	43	1	3	51	1.28
523673--523741	29	2.4	30	76	20	83	44	0	0	55	0.99
523688--523752	29	2.2	29	86	5	87	47	0	0	52	1.00
523675--523751	39	2.0	39	82	5	93	48	0	0	51	1.00
523760--523843	9	9.1	9	67	14	55	53	1	0	45	1.08
526114--526155	17	2.4	19	84	15	63	38	2	4	54	1.34
526123--526161	17	2.3	17	86	8	53	48	2	2	46	1.29
526288--526330	5	8.6	5	92	0	50	62	0	2	34	1.08
527163--527277	56	2.0	57	96	3	214	27	13	19	39	1.90
528848--528880	16	2.1	17	88	11	52	42	0	6	51	1.26
528920--528956	2	18.0	2	94	5	65	48	2	0	48	1.15
530948--530984	13	3.1	13	77	22	53	37	0	0	62	0.96
530947--530995	23	2.1	23	81	7	55	38	2	0	59	1.09
531202--531261	29	2.1	29	93	0	102	26	16	11	45	1.82
531369--531419	22	2.3	21	78	15	50	39	0	5	54	1.24
531965--532004	21	1.9	21	85	10	55	42	0	0	57	0.98
533433--533476	15	2.9	15	86	6	54	54	0	2	43	1.12
534724--534765	22	1.9	22	85	9	59	35	0	0	64	0.94
536186--536248	25	2.5	25	76	19	69	44	3	0	52	1.17
536236--536295	22	2.7	22	74	7	59	35	1	0	63	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
539381--539435	18	2.9	19	74	12	60	45	0	0	54	0.99
540053--540099	21	2.2	21	84	0	58	65	0	2	31	1.04
540038--540093	16	3.4	16	74	16	53	62	0	1	35	1.06
540131--540165	8	4.4	8	89	10	54	51	0	0	48	1.00
540123--540184	26	2.5	26	80	17	69	54	0	1	43	1.09
540134--540166	17	2.0	17	94	5	59	54	0	0	45	0.99
540854--540920	30	2.2	30	89	0	98	35	20	2	40	1.68
543470--543516	20	2.3	21	88	3	69	12	34	2	51	1.52
544434--544469	2	18.0	2	100	0	72	50	0	0	50	1.00
548910--548946	2	18.5	2	100	0	74	51	0	0	48	1.00
551214--551264	21	2.4	22	83	9	61	54	0	1	43	1.11
551672--551757	30	2.9	30	83	8	104	53	0	0	46	1.00
556034--556132	32	3.1	32	100	0	198	18	18	13	50	1.78
559064--559099	4	8.8	4	87	6	54	22	0	2	75	0.94
559374--559419	24	1.9	24	82	8	58	36	8	6	47	1.60
559726--559882	85	1.8	85	81	1	197	29	9	10	50	1.68
559726--559888	86	1.9	86	80	2	193	30	9	9	50	1.66
559960--560066	18	6.1	17	69	18	58	40	0	0	57	1.11
559944--560015	32	2.2	34	87	5	103	38	2	1	56	1.22
560272--560331	5	11.8	5	79	10	52	40	0	1	58	1.08
560268--560321	22	2.5	23	85	8	69	38	0	1	59	1.08
560306--560345	18	2.1	18	86	9	53	45	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
560618--560690	28	2.4	30	74	17	71	39	0	0	60	0.97
560913--560972	6	10.0	6	73	20	54	40	0	0	60	0.97
560913--560972	17	3.3	18	80	13	70	40	0	0	60	0.97
560914--560982	17	4.2	17	68	26	51	43	0	0	56	0.99
561170--561210	6	6.7	6	88	5	64	85	0	14	0	0.60
561168--561210	19	2.3	18	92	8	68	86	0	13	0	0.58
561287--561314	3	9.3	3	100	0	56	32	0	32	35	1.58
562426--562471	18	2.6	18	86	3	58	69	4	2	23	1.17
563407--563449	16	2.6	17	82	14	54	60	0	2	37	1.10
563737--563798	27	2.4	24	78	10	61	51	0	0	48	1.00

Tables:   1   2   3   4   5   6