genome.fa.s470.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold470
Parameters: 2 7 7 80 10 50 1000
Length:  597437

Tables:   1   2   3   4   5   6   

This is table  4  of  6  ( 626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
325650--325766	45	2.5	47	82	10	143	50	0	0	47	1.12
325678--325718	19	2.2	19	86	0	55	51	2	0	46	1.14
325654--325767	16	7.3	16	65	7	65	50	0	0	47	1.13
325734--325761	8	3.5	8	100	0	56	50	0	0	50	1.00
329059--329088	14	2.1	14	93	0	51	16	0	3	80	0.85
330913--330966	13	4.1	13	83	9	65	16	1	3	77	1.00
330917--330966	22	2.2	22	86	10	66	18	2	2	78	0.95
330906--330964	27	2.1	28	87	9	86	13	3	3	79	0.98
332987--333068	39	2.1	39	95	0	146	34	6	13	46	1.68
333797--333823	10	2.7	10	100	0	54	0	51	11	37	1.37
333930--334003	30	2.5	30	100	0	148	25	21	20	32	1.97
334732--334776	20	2.2	20	100	0	90	31	35	24	8	1.86
337215--337256	13	3.2	13	83	6	57	14	2	4	78	1.01
337219--337268	22	2.2	22	86	10	66	16	4	4	76	1.10
339056--339118	5	13.4	5	73	18	55	17	1	3	77	0.97
339065--339118	13	4.1	13	83	9	65	16	1	3	77	1.00
339064--339116	27	2.0	27	88	7	81	15	1	3	79	0.96
340432--340542	54	2.1	54	98	0	213	40	22	19	17	1.91
340590--340615	12	2.2	12	100	0	52	57	0	7	34	1.27
345816--345843	13	2.2	13	100	0	56	42	0	28	28	1.56
347294--347469	92	1.9	93	88	1	264	39	21	18	19	1.92
353697--353722	13	2.0	13	100	0	52	38	15	15	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
353709--353746	20	1.9	20	100	0	76	31	15	13	39	1.86
353774--353823	19	2.6	19	100	0	100	36	20	12	32	1.89
354382--354425	23	1.9	23	86	9	63	9	6	4	79	1.04
354386--354444	27	2.1	28	81	9	68	11	6	3	77	1.07
356869--356950	39	2.1	39	93	0	137	34	7	13	45	1.71
357521--357628	53	2.0	53	98	0	207	25	14	29	29	1.95
357846--357894	16	3.2	16	75	16	59	48	0	0	51	1.00
357816--357894	29	2.7	29	86	5	106	46	0	1	51	1.08
358011--358118	45	2.5	42	81	11	114	43	0	4	51	1.22
358051--358091	19	2.2	19	90	0	64	46	0	4	48	1.23
358243--358359	45	2.5	47	82	10	143	50	0	0	47	1.12
358271--358311	19	2.2	19	86	0	55	51	2	0	46	1.14
358247--358360	16	7.3	16	65	7	65	50	0	0	47	1.13
358327--358354	8	3.5	8	100	0	56	50	0	0	50	1.00
361551--361608	13	4.4	12	76	18	53	13	6	1	77	1.05
362119--362165	12	3.5	13	85	11	51	61	0	0	38	0.96
362133--362162	3	9.7	3	92	7	51	63	0	0	36	0.95
362115--362186	20	3.7	19	74	20	60	58	0	1	40	1.07
362880--362905	12	2.2	12	100	0	52	30	7	0	61	1.24
363466--363502	2	18.5	2	100	0	74	48	0	0	51	1.00
364086--364268	94	1.9	95	95	3	332	30	9	15	44	1.78
364486--364534	23	2.1	23	96	0	89	26	6	18	48	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
364978--365022	21	2.1	21	92	8	74	31	24	8	35	1.86
370394--370422	2	14.5	2	100	0	58	48	0	0	51	1.00
370519--370549	15	2.1	15	93	0	53	22	16	29	32	1.95
371392--371459	19	3.9	19	78	21	85	35	11	14	38	1.83
371394--371456	32	2.0	32	96	0	117	34	12	15	36	1.86
371413--371437	13	1.9	13	100	0	50	36	16	16	32	1.90
371499--371524	13	2.0	13	100	0	52	30	15	15	38	1.88
371479--371545	33	2.0	33	88	0	98	25	14	16	43	1.86
374051--374220	52	3.3	52	78	8	175	28	25	13	31	1.94
375738--375762	2	12.5	2	100	0	50	52	0	0	48	1.00
376839--376863	2	12.5	2	100	0	50	48	0	0	52	1.00
379005--379033	15	1.9	15	100	0	58	37	0	6	55	1.27
380083--380138	21	2.7	20	83	5	58	50	3	0	46	1.19
384644--384672	2	14.5	2	100	0	58	51	0	48	0	1.00
385997--386088	30	3.1	30	69	18	75	61	3	3	31	1.28
386261--386299	6	6.5	6	85	11	53	66	0	0	33	0.92
386266--386300	11	3.0	11	91	8	52	62	0	0	37	0.95
386264--386299	17	2.1	17	90	10	56	66	0	0	33	0.92
386332--386369	17	2.2	17	86	9	51	63	2	0	34	1.09
386779--386808	3	10.0	3	100	0	60	0	33	0	66	0.92
387892--387940	19	2.6	18	87	6	62	30	2	0	67	1.02
387889--387938	20	2.4	21	81	12	59	32	2	0	66	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
388684--388746	21	3.0	19	77	20	63	57	0	0	42	0.99
389442--389503	32	1.9	33	93	3	108	46	1	3	48	1.28
389526--389593	34	2.0	34	83	11	86	30	1	0	67	0.99
391098--391141	3	14.7	3	90	0	70	65	2	2	29	1.16
391499--391545	11	4.1	11	82	17	60	27	0	0	72	0.85
391506--391545	10	3.4	13	83	16	52	27	0	0	72	0.85
391499--391545	23	2.0	23	92	8	78	27	0	0	72	0.85
391683--391736	22	2.5	22	80	16	69	38	0	0	61	0.96
391982--392032	16	3.3	15	91	5	75	15	1	1	80	0.89
391982--392029	23	2.1	23	84	7	62	14	2	2	81	0.88
391989--392058	8	8.1	8	77	19	70	18	1	1	78	0.90
391975--392051	12	6.9	11	71	10	50	20	1	2	75	1.00
391982--392029	8	6.3	7	80	17	51	14	2	2	81	0.88
391996--392074	26	3.0	26	77	15	74	24	1	1	73	0.98
392407--392445	20	2.1	18	86	13	53	53	0	2	43	1.14
393651--393706	10	5.4	10	79	8	58	71	1	0	26	0.96
393651--393706	21	2.7	21	86	5	78	71	1	0	26	0.96
394811--394872	26	2.3	27	83	8	74	51	0	0	48	1.00
395438--395481	21	2.0	22	86	4	63	59	0	0	40	0.98
408963--409149	62	3.0	62	94	0	311	23	14	28	33	1.94
409463--409509	20	2.3	20	75	13	51	61	0	2	36	1.08
409512--409571	24	2.5	23	84	13	68	36	0	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
409529--409562	17	1.9	17	94	5	59	32	0	0	67	0.91
409664--409716	18	2.7	20	77	14	65	49	0	9	41	1.35
409664--409725	19	3.2	18	72	19	54	51	0	8	40	1.31
415352--415391	21	2.0	21	90	5	64	37	0	0	62	0.95
415644--415703	29	2.1	29	90	0	93	35	11	8	45	1.71
420721--420772	26	2.0	26	85	3	70	48	0	1	50	1.12
426740--426780	20	2.0	20	100	0	82	39	0	0	60	0.96
426735--426765	14	2.1	15	94	5	55	41	0	0	58	0.98
426746--426793	20	2.4	20	86	6	62	43	0	0	56	0.99
427024--427074	16	3.2	16	77	2	59	52	0	0	47	1.00
427216--427248	17	2.0	16	94	5	57	60	0	0	39	0.97
427199--427327	39	3.3	39	78	13	122	55	0	0	44	1.05
427199--427262	22	3.1	21	74	21	73	60	0	0	39	0.97
427257--427326	20	3.5	20	74	12	54	48	0	1	50	1.09
427616--427686	10	7.7	10	71	25	50	43	0	0	56	0.99
427623--427686	19	3.5	19	77	12	71	43	0	0	56	0.99
427616--427686	37	1.9	37	82	5	90	43	0	0	56	0.99
427633--427722	27	3.6	26	78	14	91	37	0	0	62	0.96
427633--427722	26	3.4	28	76	17	77	37	0	0	62	0.96
427600--427700	15	6.4	16	68	16	59	38	0	0	61	0.96
427635--427686	18	2.8	18	77	11	61	40	0	0	59	0.97
428019--428060	17	2.5	17	77	11	50	33	14	2	50	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
428948--428996	17	2.8	18	75	24	52	42	0	0	57	0.99
431600--431645	21	2.2	21	84	0	56	41	0	0	58	0.98
431792--431826	13	2.8	13	87	12	56	60	0	0	40	0.97
432541--432569	13	2.1	14	93	6	51	58	6	3	31	1.41
432565--432597	11	2.9	12	91	8	52	39	0	0	60	0.97
436454--436532	32	2.4	32	81	6	88	32	26	24	16	1.96
437207--437255	18	2.8	18	84	9	57	32	0	2	65	1.04
437287--437316	13	2.2	14	94	5	53	43	0	0	56	0.99
439513--439576	25	2.7	24	80	17	71	70	0	28	1	0.97
441237--441288	13	3.8	13	90	7	77	13	0	0	86	0.57

Tables:   1   2   3   4   5   6