genome.fa.s479.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold479
Parameters: 2 7 7 80 10 50 1000
Length:  1265690

Tables:   1   2   3   4   5   6   7   8   9   

This is table  9  of  9  ( 1016 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1197243--1197268	13	2.0	13	100	0	52	38	15	15	30	1.88
1197225--1197288	32	2.0	33	90	3	103	42	15	14	28	1.86
1198027--1198452	81	5.3	80	77	4	383	41	15	25	18	1.89
1198029--1198336	121	2.6	121	79	5	293	41	14	25	18	1.88
1198048--1198568	40	12.9	40	77	7	313	40	14	26	18	1.89
1198357--1198568	81	2.6	80	77	7	205	38	14	27	19	1.90
1198956--1199032	20	3.8	20	78	13	75	32	15	12	38	1.86
1201059--1201084	13	2.0	13	100	0	52	30	15	15	38	1.88
1201782--1201825	21	2.1	21	83	8	54	25	31	4	38	1.76
1203630--1203656	13	2.1	13	100	0	54	37	14	14	33	1.88
1207560--1207604	21	2.1	21	84	8	56	22	20	4	53	1.63
1209811--1209836	13	2.0	13	100	0	52	30	15	15	38	1.88
1212518--1212603	35	2.4	35	79	9	102	36	12	29	22	1.91
1213173--1213437	90	3.0	89	83	2	334	33	16	25	24	1.96
1214081--1214149	31	2.3	30	90	5	111	17	0	15	66	1.25
1215481--1215506	13	2.0	13	100	0	52	30	15	15	38	1.88
1215461--1215524	32	2.0	33	87	3	94	29	14	14	42	1.84
1217054--1217079	13	2.0	13	100	0	52	30	15	15	38	1.88
1217034--1217097	32	2.0	33	87	3	94	28	14	17	40	1.88
1217765--1217799	16	2.2	16	100	0	70	14	40	5	40	1.69
1219646--1219671	13	2.0	13	100	0	52	38	15	15	30	1.88
1223585--1223629	21	2.1	21	84	8	56	22	20	4	53	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1223763--1223795	16	2.1	16	88	5	50	30	12	3	54	1.52
1225849--1225874	13	2.0	13	100	0	52	30	15	15	38	1.88
1225829--1225892	32	2.0	33	87	3	94	28	14	17	40	1.88
1228555--1228640	45	1.9	45	85	2	120	36	19	6	37	1.79
1231935--1231965	16	1.9	16	93	0	53	35	9	0	54	1.33
1235053--1235087	15	2.3	15	95	0	61	28	28	0	42	1.56
1236666--1236731	33	2.0	33	85	5	89	33	15	15	36	1.88
1242426--1242534	1	109.0	1	75	0	92	87	11	1	0	0.63
1242428--1242535	40	2.7	39	86	10	141	86	11	2	0	0.68
1242429--1242534	50	2.1	50	84	10	146	86	11	1	0	0.64
1242427--1242534	31	3.7	30	79	9	107	87	11	1	0	0.63
1243973--1244207	34	7.0	29	77	19	137	21	34	12	31	1.91
1243997--1244258	34	7.4	36	86	9	330	20	35	11	32	1.88
1243997--1244258	109	2.5	108	88	6	387	20	35	11	32	1.88
1243997--1244258	143	1.8	143	86	4	388	20	35	11	32	1.88
1244243--1244312	33	2.1	35	91	5	117	25	35	17	21	1.95
1244312--1244605	49	6.0	49	82	11	334	26	24	16	32	1.96
1244404--1244496	43	2.2	43	98	0	177	26	25	17	30	1.97
1244406--1244474	22	3.2	22	62	25	56	26	26	17	30	1.97
1244358--1244549	92	2.0	95	92	4	318	26	25	16	32	1.96
1244450--1244602	52	2.9	53	81	7	195	24	23	16	35	1.95
1244450--1245002	168	3.3	169	87	4	715	22	26	15	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1245599--1245623	13	1.9	13	100	0	50	36	16	16	32	1.90
1245687--1245711	13	1.9	13	100	0	50	32	16	16	36	1.90
1245720--1245843	52	2.4	52	94	1	214	35	18	17	28	1.94
1251673--1252196	156	3.4	155	81	3	579	39	20	15	25	1.91
1251726--1252187	155	3.0	155	81	3	559	40	20	14	24	1.90
1252592--1252667	20	3.7	20	78	13	82	32	15	9	42	1.79
1256243--1256268	13	2.0	13	100	0	52	30	15	15	38	1.88
1258810--1258848	13	3.0	13	96	0	69	35	15	17	30	1.91
1258834--1258872	20	2.0	20	94	0	69	51	10	15	23	1.73
1260919--1260949	15	2.1	15	93	0	53	12	22	16	48	1.80
1262751--1262795	21	2.1	21	84	8	56	22	20	4	53	1.63
1265373--1265413	21	1.9	22	85	5	57	43	4	4	46	1.46

Tables:   1   2   3   4   5   6   7   8   9

The End!