genome.fa.s480.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold480
Parameters: 2 7 7 80 10 50 1000
Length:  956445

Tables:   1   2   3   4   5   6   7   

This is table  1  of  7  ( 736 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3446--3480	18	1.9	18	88	0	52	57	5	34	2	1.37
5831--5935	1	105.0	1	76	0	75	85	5	8	0	0.73
5837--5935	14	7.5	13	77	6	85	85	6	8	0	0.73
7850--7906	25	2.3	24	82	8	62	26	5	7	61	1.43
8130--8365	79	3.0	79	75	7	228	29	24	10	35	1.89
8324--8396	28	2.6	28	84	0	101	26	38	13	21	1.91
8246--8476	109	2.1	108	81	4	268	27	32	11	28	1.92
10780--10846	35	1.9	35	87	6	100	43	7	17	31	1.77
13687--13736	20	2.5	20	83	0	64	22	2	6	70	1.20
16456--16485	9	3.2	9	95	4	51	76	0	13	10	1.01
17021--17081	32	1.9	32	89	0	95	47	3	1	47	1.28
17754--17814	29	2.1	29	81	9	70	55	0	0	44	0.99
17772--17814	7	6.0	7	91	8	61	53	0	0	46	1.00
21485--21514	15	2.0	15	100	0	60	33	13	20	33	1.91
24097--24203	52	2.1	52	85	7	146	53	1	35	9	1.44
24117--24196	27	3.0	26	71	12	74	53	1	36	8	1.40
30320--30399	34	2.4	34	87	4	117	31	20	11	37	1.87
31018--31053	19	1.9	19	88	5	56	30	22	13	33	1.93
31362--31404	15	3.1	14	83	10	52	51	0	2	46	1.13
31429--31471	18	2.6	16	80	16	52	23	4	0	72	1.04
31629--31674	25	1.9	25	86	8	69	30	4	2	63	1.26
32069--32131	23	2.7	23	80	11	67	38	0	1	60	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36010--36038	14	2.1	14	100	0	58	44	20	6	27	1.77
36625--37966	332	4.0	333	96	0	2473	47	8	7	36	1.63
38871--38946	20	3.7	20	76	13	91	32	14	17	35	1.90
38858--38944	42	2.1	42	95	0	156	32	18	13	35	1.90
38858--38924	22	3.1	22	69	16	68	31	20	11	35	1.89
41001--41061	21	2.9	22	79	20	76	54	3	24	18	1.58
42563--42588	13	2.0	13	100	0	52	38	7	7	46	1.61
45099--45155	21	2.7	21	97	0	105	33	10	19	36	1.86
45211--45278	19	3.9	19	78	21	85	35	11	14	38	1.83
45232--45256	13	1.9	13	100	0	50	36	16	16	32	1.90
45213--45275	32	2.0	32	96	0	117	34	12	15	36	1.86
45318--45343	13	2.0	13	100	0	52	30	15	15	38	1.88
45298--45364	33	2.0	33	88	0	98	26	14	14	43	1.85
46539--46595	21	2.7	21	91	0	96	33	10	21	35	1.87
46651--46718	19	3.9	19	78	21	85	35	11	14	38	1.83
46672--46696	13	1.9	13	100	0	50	36	16	16	32	1.90
46653--46715	32	2.0	32	96	0	117	34	12	15	36	1.86
46758--46783	13	2.0	13	100	0	52	30	15	15	38	1.88
46738--46804	33	2.0	33	88	0	98	25	14	16	43	1.86
47979--48035	21	2.7	21	97	0	105	33	10	19	36	1.86
48091--48158	19	3.9	19	78	21	85	35	11	14	38	1.83
48112--48136	13	1.9	13	100	0	50	36	16	16	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48093--48155	32	2.0	32	96	0	117	34	12	15	36	1.86
48198--48223	13	2.0	13	100	0	52	30	15	15	38	1.88
48178--48244	33	2.0	33	88	0	98	26	14	14	43	1.85
49418--49474	21	2.7	21	94	0	96	33	12	19	35	1.89
49530--49661	19	7.9	19	72	27	129	34	12	15	37	1.84
49551--49639	13	5.9	13	72	27	70	34	13	15	35	1.87
49532--49658	32	4.0	32	98	0	245	34	12	15	37	1.86
49701--49726	13	2.0	13	100	0	52	30	15	15	38	1.88
49681--49747	33	2.0	33	88	0	98	25	14	16	43	1.86
52259--52480	52	4.3	50	77	6	174	29	25	12	32	1.92
52468--52539	28	2.6	28	86	0	90	22	33	19	25	1.97
52090--52590	263	1.9	263	89	3	776	28	27	13	30	1.94
52493--52697	79	2.6	79	81	1	223	24	29	16	28	1.97
54194--54266	20	3.6	19	74	15	74	31	10	19	38	1.86
54184--54275	42	2.2	42	98	0	175	29	15	17	38	1.90
55244--55445	79	2.6	79	84	3	246	30	16	28	25	1.97
55462--56120	52	12.6	52	66	16	272	33	12	25	28	1.92
55461--56108	51	12.4	51	69	15	310	32	12	26	28	1.93
55664--55740	28	2.7	29	84	4	86	22	19	35	23	1.96
55351--56118	262	2.9	263	94	0	1324	32	12	26	27	1.93
58460--58513	20	2.7	20	97	0	99	40	12	18	27	1.87
58500--58525	13	2.0	13	100	0	52	38	15	15	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58512--58553	21	2.0	21	95	0	75	28	16	11	42	1.84
60249--60334	38	2.4	35	79	13	86	43	0	0	56	0.99
60596--60644	15	3.3	15	80	8	57	75	0	24	0	0.80
60610--60648	9	4.2	9	83	6	51	82	0	17	0	0.68
61155--61201	22	2.2	21	84	3	58	25	0	2	72	0.96
61818--61859	17	2.3	19	84	8	52	30	2	0	66	1.04
62073--62139	4	17.8	4	84	9	88	79	0	19	1	0.82
62077--62156	17	4.4	18	82	14	94	81	0	16	2	0.80
62073--62142	23	3.1	23	82	9	92	80	0	18	1	0.80
62073--62156	27	3.3	27	81	8	104	80	0	16	2	0.81
62077--62159	8	10.2	8	81	12	71	81	0	15	2	0.78
62072--62170	17	5.4	18	80	14	89	79	0	14	6	0.90
62073--62160	15	5.7	15	79	16	65	80	0	15	3	0.84
62089--62170	27	3.1	26	77	10	76	81	0	12	6	0.85
62173--62235	24	2.6	25	72	7	58	28	0	6	65	1.17
62187--62277	37	2.5	37	78	18	93	30	1	3	64	1.16
62245--62291	16	2.9	16	80	3	58	25	2	4	68	1.19
62330--62391	19	3.3	19	76	10	56	37	1	4	56	1.30
70244--70283	2	20.0	2	94	0	71	50	2	0	47	1.14
70486--70518	8	3.9	9	88	11	52	45	6	0	48	1.27
71602--71649	20	2.5	19	76	6	53	35	0	4	60	1.16
72123--72160	12	3.2	12	85	11	51	39	2	0	57	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76893--76923	15	2.1	15	93	0	53	48	19	0	32	1.49
77562--77586	13	1.9	13	100	0	50	36	16	16	32	1.90
77542--77607	32	2.0	33	94	2	116	34	12	16	36	1.86
77648--77672	13	1.9	13	100	0	50	32	16	16	36	1.90
81690--81912	100	2.2	99	85	5	281	36	12	22	28	1.90
86916--86969	20	2.7	20	91	2	81	29	16	12	40	1.86
87728--87863	52	2.6	51	80	3	121	41	13	15	29	1.86
87727--87863	51	2.7	52	81	1	159	40	13	16	29	1.87
93738--93838	16	5.9	17	77	15	86	21	11	14	51	1.75
96925--97053	52	2.5	52	90	0	204	31	16	16	36	1.91
96925--97073	52	2.9	51	85	4	192	32	16	16	34	1.91
97062--97086	13	1.9	13	100	0	50	36	16	16	32	1.90
97152--97176	13	1.9	13	100	0	50	32	16	16	36	1.90
97130--97196	33	2.0	33	88	0	98	40	14	11	32	1.83
97763--98270	165	3.1	163	80	8	591	42	13	9	34	1.76
99895--100082	71	2.6	70	87	3	241	30	14	12	42	1.82
99979--100032	20	2.8	19	83	5	72	35	11	12	40	1.79
100017--100133	51	2.3	51	88	2	164	29	18	11	40	1.85
106195--106319	52	2.4	52	93	0	205	26	18	18	36	1.94
106195--106339	52	2.8	52	86	4	186	28	17	18	35	1.94
106328--106352	13	1.9	13	100	0	50	36	16	16	32	1.90
106393--106459	33	2.0	33	88	0	98	40	14	11	32	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106415--106439	13	1.9	13	100	0	50	32	16	16	36	1.90
117668--117748	8	9.9	8	75	16	69	82	11	2	3	0.89
117664--117750	22	4.0	21	76	15	79	82	11	2	3	0.88
117666--117735	15	4.6	15	72	19	56	84	10	2	2	0.83
117671--117750	23	3.5	23	76	10	74	82	11	2	3	0.89
118995--119555	28	19.9	28	85	3	651	30	31	16	21	1.95
120451--120506	20	2.8	19	81	7	67	37	12	12	37	1.81
120524--120669	20	6.8	20	74	16	121	30	13	13	42	1.82
120524--120668	40	3.8	40	75	18	175	31	13	13	42	1.83
120441--120649	72	2.9	72	93	0	348	30	14	12	42	1.83

Tables:   1   2   3   4   5   6   7