genome.fa.s480.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold480
Parameters: 2 7 7 80 10 50 1000
Length:  956445

Tables:   1   2   3   4   5   6   7   

This is table  3  of  7  ( 736 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
294271--295046	176	4.4	176	82	9	895	25	29	19	25	1.99
294294--295046	235	3.2	234	87	4	1015	25	29	19	25	1.99
295111--295168	21	2.8	21	97	0	107	32	10	18	37	1.85
295109--295183	21	3.6	20	78	8	78	34	13	17	34	1.89
295219--295318	19	6.0	18	68	29	71	39	12	14	35	1.82
295222--295315	32	3.0	32	93	1	154	38	12	14	34	1.85
295338--295394	21	2.8	21	91	2	89	24	17	12	45	1.83
297902--298120	52	4.2	51	82	2	249	30	24	11	33	1.91
298105--298186	28	2.9	28	78	7	78	24	30	18	26	1.98
309546--309617	28	2.6	28	86	0	90	22	19	36	22	1.95
309467--309671	107	1.9	108	84	3	279	30	16	27	25	1.96
309605--309823	50	4.3	49	80	10	208	34	11	23	30	1.91
309495--309997	260	1.9	262	93	1	859	32	12	26	28	1.93
309866--309998	52	2.6	51	85	3	185	31	9	26	32	1.89
312397--312694	28	10.6	28	74	7	210	24	15	28	30	1.96
314043--314099	20	2.8	20	94	0	105	24	15	15	43	1.86
314081--314110	13	2.3	13	100	0	60	30	16	13	40	1.87
316618--316689	28	2.6	28	81	0	81	20	25	23	30	1.99
325461--325510	20	2.5	20	87	6	66	34	18	10	38	1.84
328600--328663	31	2.1	30	82	5	76	45	9	7	37	1.66
329343--329368	13	2.0	13	100	0	52	30	15	15	38	1.88
329323--329389	33	2.0	33	88	0	98	25	14	16	43	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
331714--331836	51	2.4	53	83	5	162	30	23	12	33	1.91
331820--331893	27	2.7	28	87	2	96	25	33	18	21	1.96
331878--332099	52	4.3	52	79	5	191	30	25	12	32	1.92
332082--332158	28	2.8	28	82	7	86	23	35	19	22	1.96
331714--332206	263	1.9	262	88	1	754	28	26	13	31	1.94
346726--346759	13	2.5	13	95	4	59	85	11	2	0	0.71
347745--349172	59	24.2	59	94	1	2345	25	28	21	25	1.99
351613--351676	31	2.1	30	82	5	76	45	9	7	37	1.66
352334--352400	33	2.0	33	85	0	89	25	13	16	44	1.84
352911--352944	10	3.3	10	84	8	50	79	20	0	0	0.73
352912--352944	11	3.1	11	82	8	50	81	18	0	0	0.68
354613--354734	51	2.3	53	87	5	169	31	22	12	32	1.91
354613--354997	52	7.4	51	70	12	183	29	24	12	32	1.93
354718--354792	27	2.7	28	85	2	98	24	33	20	22	1.97
354823--355000	52	3.4	52	79	6	189	30	25	11	32	1.92
354608--355103	264	1.9	262	89	1	769	28	26	13	31	1.93
358627--358739	59	1.9	59	89	3	174	53	11	8	26	1.66
358627--358768	59	2.4	58	82	9	171	51	12	10	25	1.72
358759--358798	18	2.2	18	100	0	80	55	17	10	17	1.69
367880--367925	19	2.5	18	86	6	65	69	0	0	30	0.89
368932--368973	22	1.9	22	90	9	68	57	9	7	26	1.56
370022--370065	15	3.1	15	80	9	56	47	2	0	50	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
370024--370067	13	3.2	13	83	6	52	50	2	0	47	1.13
370922--370964	21	2.0	22	86	13	63	39	4	4	51	1.44
370959--371026	32	2.1	33	83	8	86	42	2	4	50	1.37
371031--371094	18	3.4	18	77	10	65	26	4	3	65	1.27
373804--373849	21	2.2	20	84	3	56	69	0	2	28	1.00
373831--373960	24	5.5	23	74	23	87	60	0	0	39	1.03
373831--373960	16	8.2	16	69	23	80	60	0	0	39	1.03
373858--373955	49	2.0	48	80	11	110	57	1	0	41	1.05
375106--375135	14	2.1	14	93	0	51	36	16	0	46	1.47
375271--375298	2	14.0	2	100	0	56	50	0	0	50	1.00
377055--377093	2	19.5	2	100	0	78	51	0	0	48	1.00
377364--377417	18	3.1	18	77	15	60	62	0	0	37	0.95
377365--377400	18	1.9	18	94	5	63	61	0	0	38	0.96
378284--378321	17	2.2	17	86	9	51	68	0	0	31	0.90
378547--378586	6	6.5	6	82	5	53	77	5	0	17	0.94
381619--381662	17	2.6	18	85	10	65	52	2	0	45	1.13
381552--381814	123	2.1	127	81	11	312	46	1	0	51	1.15
381692--381751	5	12.6	5	79	13	56	43	0	0	56	0.99
381741--381780	21	1.9	21	90	10	64	60	0	0	40	0.97
381978--382007	8	3.6	8	95	4	51	40	0	0	60	0.97
384250--384283	14	2.4	14	81	18	52	35	32	0	32	1.58
387728--387832	28	3.8	28	77	6	90	30	14	24	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
387800--387999	79	2.6	78	79	2	222	37	10	22	30	1.88
387800--388031	78	3.0	77	79	5	234	36	10	22	30	1.88
391019--391063	21	2.1	21	87	0	63	37	22	8	31	1.85
397039--397488	78	5.8	77	75	8	290	31	11	18	39	1.85
397356--397506	78	1.9	78	82	5	189	32	11	17	37	1.87
398279--398311	18	1.9	17	88	11	50	60	0	3	36	1.12
400500--400533	8	4.2	8	84	0	50	44	0	0	55	0.99
400502--400599	22	4.2	24	77	19	91	42	0	2	55	1.11
400500--400548	16	2.9	16	87	6	62	40	0	0	59	0.98
400647--400686	20	2.0	20	90	9	64	47	2	0	50	1.14
400646--400695	20	2.7	19	75	22	52	52	2	0	46	1.12
400645--400697	21	2.5	21	76	17	56	54	1	0	43	1.11
400919--400978	24	2.5	24	80	2	75	46	1	1	50	1.21
401005--401051	22	2.1	23	88	4	69	42	0	0	57	0.98
403179--403256	40	2.0	41	82	10	99	47	14	8	29	1.74
404479--404523	15	2.9	15	83	3	54	2	15	0	82	0.77
404473--404523	8	6.5	8	78	13	61	1	15	0	82	0.76
404473--404520	22	2.1	23	88	3	71	2	14	0	83	0.74
404759--404849	40	2.3	40	80	3	94	38	8	15	37	1.78
404776--404869	40	2.4	40	80	5	102	38	8	17	36	1.80
404949--404995	16	3.1	16	75	25	57	46	4	4	44	1.42
407059--407084	9	2.9	9	100	0	52	23	19	0	57	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
407501--408578	547	2.0	548	89	0	1649	30	17	18	33	1.94
409512--409542	16	2.0	15	93	6	53	19	0	3	77	0.90
411021--411071	15	3.2	16	78	10	68	9	9	33	47	1.70
411281--411705	138	3.1	137	88	6	637	16	21	12	49	1.78
411635--411805	85	2.0	85	96	0	315	19	22	15	42	1.89
412339--413067	42	17.2	42	82	3	791	36	19	30	14	1.91
421292--421330	20	1.9	21	94	5	71	30	10	12	46	1.75
421364--421415	19	2.7	20	87	6	79	28	13	19	38	1.89
421364--421421	19	3.0	18	82	12	71	25	12	22	39	1.89
423946--423984	13	3.0	13	96	0	69	35	15	15	33	1.89
426066--426096	15	2.1	15	93	0	53	12	22	16	48	1.80
427899--427943	22	2.1	21	84	8	56	22	15	6	55	1.63
427894--427943	21	2.3	20	80	10	55	22	14	6	58	1.58
430140--430191	19	2.7	20	87	6	79	28	13	19	38	1.89
430140--430197	19	3.0	18	82	12	71	25	12	22	39	1.89
433370--433445	32	2.4	32	93	0	125	34	18	13	34	1.89
433383--433445	19	3.6	19	70	24	66	34	19	11	34	1.87
433503--433541	21	1.9	20	94	5	69	35	12	15	35	1.86
434359--434447	43	2.1	43	93	0	151	35	19	22	22	1.95
434465--434702	28	8.5	27	86	8	266	18	17	30	32	1.95
436147--436198	1	52.0	1	76	0	50	0	1	9	88	0.59
436148--436197	10	4.9	10	90	2	73	0	2	10	88	0.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
436135--436196	14	4.4	14	80	15	65	0	1	12	85	0.67
436135--436198	15	4.3	15	81	0	74	0	1	12	85	0.66
450111--450162	19	2.6	21	81	6	63	28	15	19	36	1.92
454447--455538	545	2.0	549	90	2	1723	31	17	17	33	1.94
458449--458484	13	2.8	13	82	0	54	22	0	2	75	0.94
460232--460656	138	3.1	138	91	0	708	14	22	13	49	1.78
464055--464119	34	1.9	34	90	0	103	46	13	1	38	1.53
469414--469482	34	2.0	34	100	0	138	39	8	11	40	1.72
469416--469498	34	2.4	33	88	7	96	40	6	12	40	1.67
482311--482402	46	2.0	44	82	14	107	50	1	0	48	1.08

Tables:   1   2   3   4   5   6   7