genome.fa.s492.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold492
Parameters: 2 7 7 80 10 50 1000
Length:  781693

Tables:   1   2   3   4   5   6   

This is table  3  of  6  ( 682 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
298250--298313	32	2.0	33	90	3	103	28	14	18	39	1.90
298250--298320	19	4.0	18	72	25	62	26	12	21	39	1.89
305107--305186	19	3.9	19	84	12	81	83	13	2	0	0.74
305105--305186	11	7.9	10	82	11	94	82	14	2	0	0.76
305144--305184	14	2.9	14	89	7	57	82	12	4	0	0.81
305105--305186	24	3.4	23	79	15	87	82	14	2	0	0.76
306204--306764	55	9.9	55	83	9	551	27	28	20	23	1.99
306204--306764	110	4.9	111	87	5	657	27	28	20	23	1.99
306166--306764	165	3.5	164	81	9	614	26	28	20	24	1.99
307392--307455	19	3.7	18	76	23	75	37	12	15	34	1.85
307409--307433	13	1.9	13	100	0	50	36	16	16	32	1.90
307392--307452	32	1.9	32	96	0	113	36	13	16	34	1.87
307496--307520	13	1.9	13	100	0	50	32	16	16	36	1.90
309972--310047	27	2.8	28	89	2	109	23	34	21	21	1.97
310030--310251	52	4.3	51	82	2	246	29	26	12	31	1.92
309863--310251	52	7.4	50	70	14	223	30	26	12	31	1.92
310234--310310	28	2.8	28	82	7	86	23	35	19	22	1.96
309863--310361	263	1.9	263	90	2	797	28	27	13	30	1.94
310185--310389	107	1.9	108	81	1	250	26	28	16	28	1.97
310264--310463	79	2.5	79	80	6	210	24	31	18	27	1.97
311494--311546	27	2.0	27	96	0	97	24	30	20	24	1.99
311499--311571	27	2.6	28	87	6	96	23	31	23	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
314728--314766	21	1.9	20	89	5	60	43	12	12	30	1.81
319550--319575	10	2.6	10	100	0	52	34	0	0	65	0.93
320238--320301	31	2.1	31	82	8	78	67	0	1	31	1.00
320790--320816	6	4.5	6	100	0	54	33	0	0	66	0.92
321111--321214	52	2.0	52	100	0	208	40	13	15	30	1.86
322079--322115	2	18.5	2	100	0	74	48	0	0	51	1.00
322164--322199	2	18.0	2	100	0	72	0	50	0	50	1.00
326740--326790	2	25.5	2	95	0	93	50	0	0	49	1.00
332778--332877	50	2.0	50	100	0	200	34	16	14	36	1.88
336600--336642	2	21.5	2	95	0	77	48	0	51	0	1.00
336790--336854	14	4.4	14	72	12	51	55	0	1	43	1.09
336944--336989	5	9.6	5	79	9	51	23	0	2	73	0.94
336933--336984	23	2.2	24	86	6	70	28	0	0	71	0.87
336936--336992	17	3.4	16	78	4	60	28	0	1	70	0.98
337239--337279	6	7.2	6	97	2	68	0	12	0	87	0.53
338687--338719	4	8.2	4	100	0	66	24	0	0	75	0.80
339301--339336	18	2.0	18	89	10	56	66	0	0	33	0.92
339300--339348	21	2.3	21	79	13	55	65	0	0	34	0.93
339315--339366	11	5.0	10	79	11	52	63	0	1	34	1.06
339351--339419	32	2.1	33	86	7	97	47	0	2	49	1.16
339387--339439	27	1.9	28	85	11	74	50	0	0	49	1.00
339885--339927	14	3.2	14	87	6	54	74	0	0	25	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
339919--339977	15	3.9	15	77	20	68	49	0	0	50	1.00
339924--339999	10	7.8	10	68	20	54	47	0	0	52	1.00
339949--339999	20	2.7	19	85	11	70	45	0	0	54	0.99
340574--340637	26	2.6	24	80	14	76	45	1	3	50	1.27
341271--341317	22	2.1	22	96	0	85	36	12	6	44	1.68
341315--341339	11	2.3	11	100	0	50	24	0	16	60	1.36
342102--342187	31	2.9	29	81	10	102	51	2	10	36	1.49
342421--342465	23	2.0	23	82	8	56	35	0	0	64	0.94
344204--344243	20	2.0	20	85	0	53	62	0	0	37	0.95
344405--344454	17	2.9	17	80	16	59	56	0	4	40	1.18
346213--346262	14	3.5	14	78	13	57	68	0	0	32	0.90
346778--346825	15	3.1	15	81	3	51	54	25	12	8	1.65
349666--349764	33	3.0	33	75	0	90	39	19	26	15	1.91
351577--351626	15	3.1	17	81	18	63	56	0	0	44	0.99
354214--354273	25	2.4	25	77	0	66	40	6	0	53	1.27
354390--354477	43	2.0	43	82	10	108	64	10	4	20	1.41
354955--355043	13	5.9	13	72	27	70	34	13	17	33	1.89
354935--355067	32	4.1	32	98	0	248	34	12	18	35	1.87
354933--355062	19	7.8	18	70	29	110	33	12	17	36	1.87
355104--355193	13	7.8	12	70	27	61	34	16	16	32	1.92
355084--355197	34	3.4	34	100	0	228	35	17	14	32	1.91
355206--355334	52	2.5	52	94	0	231	35	17	17	28	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
361090--361120	2	15.5	2	100	0	62	51	0	0	48	1.00
361370--361468	27	3.8	26	77	5	94	32	4	15	48	1.63
366019--366081	27	2.4	26	86	5	90	19	4	17	58	1.56
366527--366600	31	2.3	31	81	11	78	45	1	1	51	1.18
366553--366615	31	2.0	31	81	6	72	53	0	1	44	1.10
368301--368351	26	2.0	25	92	3	84	39	0	0	60	0.97
368318--368372	21	2.7	20	83	8	58	43	0	0	56	0.99
368318--368373	19	2.9	18	78	19	60	44	0	0	55	0.99
374896--374937	17	2.5	17	84	0	57	57	0	0	42	0.99
376678--376733	23	2.5	22	83	11	76	51	5	0	42	1.24
377128--377185	20	2.8	20	77	15	55	53	0	0	46	1.00
378928--378953	13	2.0	13	100	0	52	30	15	15	38	1.88
378908--378971	32	2.0	33	87	3	94	28	14	17	40	1.88
380882--380906	13	1.9	13	100	0	50	32	16	16	36	1.90
381476--381522	23	2.0	24	84	12	62	61	19	4	14	1.49
384613--384638	13	2.0	13	100	0	52	30	15	15	38	1.88
384593--384656	32	2.0	33	87	3	94	28	14	17	40	1.88
385555--385588	16	2.2	15	89	5	50	67	2	0	29	1.05
385724--385904	90	2.0	90	91	0	290	48	9	2	39	1.50
403530--403596	30	2.2	30	89	5	100	56	0	4	38	1.19
409497--409536	20	2.0	20	85	9	55	47	0	2	50	1.14
411602--411657	29	2.0	27	82	6	67	39	3	0	57	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
411830--411881	13	3.4	17	70	25	51	51	0	5	42	1.25
411830--411886	29	2.0	29	92	0	96	49	0	5	45	1.24
411839--411886	13	3.5	13	76	15	51	43	0	6	50	1.27
411885--411938	15	3.7	14	78	14	56	59	0	3	37	1.15
412820--412849	2	15.0	2	100	0	60	50	0	0	50	1.00
413312--413353	17	2.4	18	84	4	50	57	0	0	42	0.99
417765--417800	13	2.8	13	91	4	56	33	13	19	33	1.91
423255--423324	19	3.6	19	82	3	95	42	14	14	28	1.84
426532--426567	12	2.8	12	88	12	54	16	2	2	77	1.00
427279--427332	24	2.4	22	79	14	65	55	0	0	44	0.99
427286--427331	23	1.9	25	86	8	69	54	0	0	45	0.99
427395--427438	16	2.8	16	89	0	61	45	0	25	29	1.54
429016--429089	20	3.7	20	89	5	105	37	9	20	32	1.85
431814--431909	50	1.9	50	84	0	129	27	20	12	39	1.89
431815--431921	50	2.1	50	82	0	124	28	20	10	41	1.85
431878--432257	79	4.8	79	78	3	314	25	23	16	34	1.96
431878--432255	158	2.4	157	80	5	411	25	23	16	34	1.96
433398--433439	18	2.3	18	95	0	75	42	11	9	35	1.74
444602--444653	15	3.5	14	84	10	59	84	11	1	1	0.78
444605--444652	8	5.9	8	80	9	53	83	12	2	2	0.83
444602--444653	16	3.3	15	87	12	70	84	11	1	1	0.78
444603--444646	18	2.4	18	88	3	61	84	13	0	2	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
445621--445806	94	1.9	98	83	8	247	25	32	15	25	1.95
445757--446436	61	11.1	61	87	3	793	25	27	18	28	1.98
445757--446436	184	3.7	183	86	4	881	25	27	18	28	1.98
445758--446436	123	5.6	120	85	3	813	25	27	18	28	1.98
446450--446626	46	4.1	45	75	10	154	23	23	11	41	1.86
446520--446699	41	4.2	41	80	5	126	21	23	11	44	1.84
447400--447454	20	2.8	20	88	0	83	27	14	14	43	1.84
451833--451960	52	2.5	52	94	3	224	30	17	17	33	1.94
452034--452100	33	2.0	33	88	0	98	40	13	11	34	1.81
452056--452080	13	1.9	13	100	0	50	32	16	16	36	1.90

Tables:   1   2   3   4   5   6