genome.fa.s492.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold492
Parameters: 2 7 7 80 10 50 1000
Length:  781693

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 682 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
712498--712799	57	5.3	58	86	4	382	20	16	31	31	1.95
712532--712816	144	2.0	144	95	0	507	20	17	31	30	1.95
712498--712816	87	3.7	87	87	3	414	20	16	31	31	1.95
712810--712943	31	4.3	30	79	9	142	32	16	29	21	1.95
712810--712981	64	2.7	62	84	8	199	36	15	27	20	1.93
712544--712899	144	2.5	140	84	6	358	24	17	31	27	1.97
712976--713182	34	6.2	33	87	5	258	34	12	32	19	1.90
712973--713181	68	3.1	67	86	7	289	34	12	32	20	1.90
714629--714726	1	98.0	1	75	0	88	0	4	8	87	0.65
714616--714697	13	6.9	12	79	19	84	0	0	13	86	0.57
714626--714723	13	7.1	14	83	12	105	0	4	9	86	0.68
717981--718334	175	2.0	175	98	0	681	24	23	13	38	1.90
720302--720399	19	5.8	19	73	26	112	33	12	18	35	1.88
720303--720397	32	3.0	32	100	0	190	33	12	18	34	1.89
720322--720378	13	3.9	13	76	24	60	35	14	17	33	1.90
720405--720430	13	2.0	13	100	0	52	30	15	15	38	1.88
722751--722887	52	2.6	52	81	5	170	29	27	10	31	1.91
722898--723117	51	4.3	51	81	7	221	30	26	11	31	1.91
722937--723117	52	3.5	52	81	4	213	30	26	10	32	1.90
722898--723117	102	2.1	103	85	5	293	30	26	11	31	1.91
723052--723252	107	1.9	107	82	7	255	27	28	14	29	1.95
724680--724704	13	1.9	13	100	0	50	36	16	16	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
724768--724792	13	1.9	13	100	0	50	32	16	16	36	1.90
724801--724920	52	2.3	52	95	0	213	34	18	17	30	1.94
733160--733330	30	5.6	30	83	10	195	23	30	19	26	1.98
733160--733335	31	5.7	31	85	6	207	22	30	19	27	1.98
733310--733992	70	9.9	69	86	7	885	20	34	12	32	1.90
733310--733997	35	19.9	34	83	10	708	20	34	12	33	1.90
733277--733994	141	5.2	137	82	9	860	20	33	12	33	1.90
733999--734064	33	2.0	34	96	3	125	27	37	18	16	1.92
734064--735314	49	25.7	49	86	7	1659	24	26	17	30	1.97
734064--735323	333	3.7	336	90	5	1775	24	26	17	30	1.97
735130--735323	95	2.1	91	85	4	253	26	26	17	29	1.97
736140--736164	13	1.9	13	100	0	50	36	16	16	32	1.90
736228--736252	13	1.9	13	100	0	50	32	16	16	36	1.90
736261--736380	52	2.3	52	95	0	213	34	18	17	30	1.94
750677--750738	1	62.0	1	73	0	52	87	12	0	0	0.55
750676--750747	16	4.5	15	87	6	90	84	13	1	0	0.68
750677--750747	24	3.0	23	82	12	90	85	12	1	0	0.65
750679--750738	8	7.5	8	82	14	79	86	13	0	0	0.57
751722--752445	61	12.4	59	84	7	725	26	27	20	25	1.99
751753--752445	55	12.0	55	81	11	630	26	27	20	25	1.99
751904--751991	26	3.3	26	65	14	70	26	30	20	22	1.98
751719--752445	110	6.2	110	80	11	724	26	27	20	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
751964--752154	27	6.9	28	60	3	73	27	26	21	24	1.99
752429--752521	42	2.2	42	82	3	107	19	29	16	35	1.93
753115--753153	21	1.9	20	94	5	69	35	12	15	35	1.86
757602--757634	13	2.4	14	85	5	50	33	0	0	66	0.92
757704--757808	10	10.8	10	68	19	62	47	0	0	50	1.14
757704--757808	18	5.4	20	65	22	62	47	0	0	50	1.14
758558--758609	20	2.6	20	79	11	61	65	5	0	28	1.16
758652--758714	24	2.7	24	81	13	69	36	1	3	58	1.23
758820--758852	15	2.3	15	89	5	50	54	0	0	45	0.99
759192--759224	3	11.0	3	100	0	66	66	0	0	33	0.92
761134--761181	25	1.9	25	86	0	69	39	0	0	60	0.97
761134--761201	14	4.9	14	74	16	61	38	0	0	61	0.96
761159--761210	18	3.2	16	78	10	54	34	0	0	65	0.93
765357--765442	13	6.8	13	70	22	67	38	2	0	59	1.10
765361--765420	24	2.3	26	72	18	63	41	0	0	58	0.98
765347--765440	37	2.5	38	83	14	117	37	2	0	60	1.09
765719--765765	18	2.6	18	80	16	60	29	0	2	68	1.02
766398--766470	23	3.5	21	75	24	59	57	0	0	42	0.98
766425--766500	9	8.3	9	73	16	50	50	1	0	48	1.09
766409--766458	17	2.9	17	82	8	57	60	0	0	40	0.97
766455--766523	36	2.0	34	86	11	95	40	1	0	57	1.07
766457--766516	26	2.2	27	83	16	72	40	1	0	58	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
766472--766525	24	2.3	23	84	12	65	37	0	0	62	0.95
767695--767770	20	3.7	19	78	18	64	46	1	0	52	1.08
768276--768329	18	2.9	19	76	15	60	40	0	3	55	1.17
768355--768403	23	2.0	25	84	15	66	51	0	0	48	1.00
769219--769399	10	17.3	11	64	22	61	39	0	0	60	0.97
769214--769397	19	9.6	19	70	18	98	39	0	0	60	0.97
769211--769352	33	3.7	39	69	20	93	42	0	0	57	0.98
769345--769394	18	2.7	20	78	12	61	34	0	0	66	0.92
769351--769391	13	3.1	13	83	16	57	29	0	0	70	0.87
769304--769399	25	4.0	25	73	16	80	40	0	0	59	0.97
769560--769598	15	2.6	14	88	8	51	66	2	0	30	1.05
771706--771734	15	2.0	15	93	6	51	37	0	0	62	0.96
772478--772561	34	2.4	34	80	11	91	73	0	19	7	1.05
773431--773565	66	2.0	66	90	2	209	34	17	19	28	1.94
777275--777353	20	3.8	20	77	12	79	35	13	11	39	1.81
780729--780868	53	2.7	51	87	2	199	31	15	10	42	1.80

Tables:   1   2   3   4   5   6

The End!