genome.fa.s492.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold492
Parameters: 2 7 7 80 10 50 1000
Length:  781693

Tables:   1   2   3   4   5   6   

This is table  4  of  6  ( 682 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
453281--453404	50	2.5	50	88	4	169	25	20	14	40	1.90
453344--453725	79	4.8	79	77	6	317	26	24	15	33	1.95
453344--453694	158	2.2	158	78	5	370	26	24	15	33	1.95
458430--458497	23	2.9	22	84	10	82	45	0	0	54	0.99
458428--458488	13	4.5	13	75	16	52	49	0	0	50	1.00
458459--458500	18	2.3	19	80	12	52	42	0	0	57	0.99
463314--463417	55	1.9	55	91	0	172	21	14	30	33	1.93
463382--463484	47	2.2	47	91	3	163	18	11	35	33	1.87
472884--472936	22	2.8	17	70	24	52	37	5	18	37	1.75
474797--474841	15	2.9	15	90	3	63	13	4	33	48	1.62
474850--474987	16	8.6	16	79	4	107	13	15	30	41	1.85
480056--480103	16	2.9	16	76	11	53	47	0	0	52	1.00
481143--481173	16	1.9	16	93	0	53	45	0	0	54	0.99
481071--481168	38	2.5	39	76	15	103	46	0	1	52	1.07
481054--481211	79	2.0	78	81	8	187	48	0	1	50	1.13
481230--481369	11	12.5	11	65	16	56	60	1	0	37	1.11
481234--481302	26	2.7	26	80	8	79	66	0	0	33	0.92
481187--481301	45	2.5	45	74	4	106	60	0	0	39	1.03
481337--481370	16	2.1	16	88	0	50	70	2	0	26	1.01
483485--483591	5	22.0	5	67	21	50	36	0	2	60	1.11
483468--483514	13	3.2	15	82	14	62	36	0	4	59	1.17
483509--483573	30	2.2	30	88	0	94	38	0	3	58	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
483468--483589	15	8.1	15	71	17	58	35	0	3	61	1.12
483714--483765	11	4.8	11	80	2	61	65	0	1	32	1.04
484094--484154	31	1.9	32	87	9	90	45	1	0	52	1.10
485131--485203	5	15.0	5	72	16	64	63	0	0	36	0.95
485130--485200	35	2.0	36	83	5	92	64	0	0	35	0.94
485137--485188	14	3.7	13	80	12	50	65	0	0	34	0.93
485131--485203	13	5.7	13	75	15	64	63	0	0	36	0.95
485129--485203	34	2.2	35	79	11	84	62	0	0	37	0.95
485147--485211	21	3.0	21	76	12	60	60	0	0	40	0.97
485129--485218	22	4.0	23	75	13	71	58	1	0	40	1.05
485166--485221	23	2.4	24	82	11	71	55	1	0	42	1.10
487278--487315	6	6.3	6	96	0	67	13	0	31	55	1.38
488769--489357	196	3.0	196	99	0	1169	34	8	11	45	1.71
489941--489968	4	7.0	4	100	0	56	75	0	25	0	0.81
491823--491863	3	13.7	3	94	0	64	31	4	0	63	1.15
492835--492900	2	33.0	2	90	0	105	50	4	0	45	1.22
496177--496217	21	2.0	21	90	4	66	19	12	17	51	1.76
501729--501759	16	1.9	16	93	0	53	32	0	3	64	1.09
502781--502830	25	2.1	25	88	7	77	48	0	2	50	1.12
503160--503235	40	2.0	37	82	12	91	51	0	2	46	1.15
505375--505400	13	2.0	13	100	0	52	53	23	15	7	1.67
507302--507335	13	2.5	14	90	4	52	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
507306--507366	23	2.5	23	84	7	68	57	1	0	40	1.08
507337--507397	31	1.9	32	87	9	90	52	3	0	44	1.17
507633--507666	17	2.0	17	100	0	68	29	0	0	70	0.87
507990--508029	21	2.0	20	86	13	57	47	0	5	47	1.24
509184--509223	18	2.2	18	86	0	53	52	0	0	47	1.00
509659--509695	19	1.9	19	89	10	58	51	0	0	48	1.00
512422--512452	6	5.2	6	92	0	53	19	16	48	16	1.81
513610--513658	21	2.3	21	82	3	62	57	0	0	42	0.99
515950--516034	31	2.8	31	77	7	95	40	10	4	44	1.60
516206--516390	34	5.5	34	88	0	264	25	7	26	40	1.82
516691--516727	19	1.9	19	100	0	74	32	16	16	35	1.91
520801--520984	34	5.5	34	88	0	255	26	7	26	40	1.82
521539--521583	17	2.5	18	80	20	58	37	2	0	60	1.09
521546--521583	17	2.2	17	90	9	60	31	2	0	65	1.06
521579--521632	25	2.1	26	86	3	74	53	0	0	46	1.00
522640--522682	15	2.8	15	89	10	61	32	0	0	67	0.91
522645--522710	17	4.0	16	81	11	64	34	1	0	63	1.04
522692--522734	21	2.0	21	82	8	52	41	2	2	53	1.26
522698--522859	89	1.8	88	83	12	217	42	1	3	51	1.30
522854--522878	9	2.8	9	100	0	50	44	0	0	56	0.99
524404--524460	24	2.4	24	96	0	105	35	7	5	52	1.51
526511--526562	8	6.4	8	75	4	50	28	0	1	69	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
526515--526564	24	2.0	25	88	11	77	30	0	2	68	1.01
526520--526573	24	2.2	24	80	6	65	33	0	1	64	1.04
527102--527136	5	6.8	5	87	6	52	74	0	0	25	0.82
527105--527138	11	3.2	11	83	8	52	70	0	0	29	0.87
530537--530757	14	15.6	14	70	10	119	26	22	23	27	2.00
530542--530667	27	4.6	27	73	4	101	26	23	23	26	2.00
538027--538382	118	3.0	117	82	2	426	30	16	17	35	1.92
539235--539316	24	3.6	23	77	9	87	31	21	23	23	1.98
542089--542131	17	2.3	18	84	11	52	55	6	6	30	1.53
542398--542439	22	1.9	22	85	9	59	40	0	2	57	1.12
542973--543007	17	2.1	17	88	0	52	8	8	5	77	1.13
542959--543152	62	3.1	62	67	14	191	15	8	7	68	1.38
543097--543131	17	2.1	17	88	0	52	8	8	5	77	1.13
542934--543179	124	2.0	124	98	0	474	17	8	8	65	1.45
543001--543193	62	3.1	62	65	16	155	18	8	7	65	1.44
543427--543510	13	6.3	13	70	10	53	26	22	25	26	2.00
543424--543517	40	2.3	40	83	7	111	26	21	24	27	1.99
548555--548595	22	1.9	22	85	5	57	68	9	17	4	1.35
550523--550606	43	2.0	43	95	0	150	36	15	15	32	1.89
552884--552921	20	1.9	20	84	10	51	50	0	5	44	1.24
552933--553006	29	2.5	28	72	14	69	44	1	1	52	1.17
557247--557307	16	3.8	16	85	8	79	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
557249--557295	6	8.3	6	77	13	55	48	0	0	51	1.00
557233--557307	32	2.3	32	84	6	98	42	1	1	54	1.17
557249--557295	11	4.2	11	78	10	51	48	0	0	51	1.00
557250--557316	16	4.1	16	84	9	66	44	0	0	55	0.99
557784--557835	22	2.4	22	90	3	88	59	0	0	40	0.97
557824--557863	20	2.0	21	90	5	64	62	0	5	32	1.17
557802--557863	20	3.0	20	81	11	63	61	0	3	35	1.12
557899--557938	6	6.5	6	86	13	55	0	47	0	52	1.00
557894--557937	20	2.2	20	84	11	56	0	50	0	50	1.00
557899--557938	19	2.2	18	86	13	55	0	47	0	52	1.00
558931--558982	20	2.7	20	90	3	79	28	11	21	38	1.88
559538--559591	27	2.0	27	92	0	90	22	24	14	38	1.91
559710--559741	16	2.0	16	93	0	55	40	18	6	34	1.76
562672--562802	70	1.9	70	85	3	183	33	11	22	32	1.90
564152--564177	13	2.0	13	100	0	52	30	15	15	38	1.88
564132--564195	32	2.0	33	87	3	94	29	14	14	42	1.84
564822--564901	39	2.0	40	85	2	108	32	23	7	36	1.83
566756--566794	13	3.0	13	92	0	60	35	12	17	33	1.88
566995--567026	8	4.0	8	100	0	64	62	25	0	12	1.30
572412--572437	13	2.0	13	100	0	52	30	15	15	38	1.88
572392--572455	32	2.0	33	90	3	103	28	14	15	42	1.86
576472--576707	118	2.0	118	95	0	427	46	15	9	28	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
579226--579569	58	6.1	58	72	12	255	46	17	9	25	1.78
579226--579455	110	2.0	113	81	8	265	48	16	8	26	1.75
579226--579687	173	2.7	171	79	10	465	48	17	9	25	1.76
579533--579687	61	2.6	59	78	10	163	52	16	7	23	1.69
582167--582205	21	1.9	20	94	5	69	35	15	12	35	1.86
582264--582387	19	7.5	19	65	29	86	27	11	25	35	1.90
582264--582462	32	6.2	32	94	0	326	30	12	21	35	1.90
582394--582454	19	3.6	18	72	25	60	36	13	14	36	1.85
582508--582533	13	2.0	13	100	0	52	30	15	15	38	1.88
596163--596267	1	105.0	1	69	0	57	83	9	3	2	0.86

Tables:   1   2   3   4   5   6