genome.fa.s492.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold492
Parameters: 2 7 7 80 10 50 1000
Length:  781693

Tables:   1   2   3   4   5   6   

This is table  5  of  6  ( 682 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
596163--596273	10	10.8	10	76	11	93	82	10	3	2	0.89
597696--597886	28	6.8	28	88	5	233	33	27	18	20	1.96
597697--597932	58	4.2	56	81	10	239	34	27	17	20	1.95
597944--599052	49	22.8	49	81	7	1210	24	25	18	32	1.97
597944--599052	101	11.4	101	85	5	1397	24	25	18	32	1.97
599702--599740	21	1.9	20	94	5	69	35	15	12	35	1.86
600783--600823	21	1.9	22	90	5	66	21	17	17	43	1.87
606239--606299	19	3.5	19	75	25	80	31	11	19	37	1.87
606240--606310	32	2.2	32	94	0	124	30	11	21	36	1.88
606259--606283	13	1.9	13	100	0	50	36	16	16	32	1.90
606352--606377	13	2.0	13	100	0	52	30	15	15	38	1.88
608771--608871	53	1.9	52	84	7	134	34	22	9	32	1.87
608859--608928	27	2.5	28	88	2	97	27	34	17	21	1.95
608960--609059	52	1.9	53	85	2	139	31	26	10	33	1.89
608773--609194	213	2.0	210	86	4	598	28	27	12	31	1.93
611197--611672	161	2.9	164	84	3	595	41	12	9	36	1.76
613998--614040	21	2.0	21	86	8	61	60	0	0	39	0.97
615048--615103	29	1.9	29	92	0	94	48	1	5	44	1.36
615342--615394	20	2.6	20	80	17	56	67	0	3	28	1.07
615357--615437	11	7.3	11	71	19	53	61	1	2	34	1.17
626188--626236	2	25.0	2	81	4	55	48	4	0	46	1.20
626540--626576	17	2.1	18	90	5	58	75	2	0	21	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
627660--627718	17	3.6	16	74	21	59	35	8	1	54	1.41
627658--627707	23	2.2	24	79	17	61	34	8	2	56	1.40
636854--636903	21	2.4	20	80	9	55	56	4	4	36	1.37
637328--637353	13	2.0	13	100	0	52	61	0	0	38	0.96
638873--638915	21	2.1	21	95	4	79	48	0	0	51	1.00
640575--640610	18	1.9	19	88	5	56	55	2	0	41	1.14
641611--641671	10	6.1	10	84	5	61	34	0	1	63	1.04
641618--641662	5	8.8	5	92	2	72	40	0	0	60	0.97
641797--641830	2	17.0	2	100	0	68	50	0	0	50	1.00
642645--642678	2	17.0	2	100	0	68	50	0	0	50	1.00
646642--646720	20	4.0	20	77	0	77	27	15	15	41	1.87
648406--648991	79	7.4	79	93	0	967	32	15	25	26	1.96
650203--650321	35	3.4	35	89	5	188	20	31	5	42	1.76
650263--650327	14	4.1	14	72	24	58	21	35	6	36	1.79
650263--650368	49	2.2	49	91	3	169	20	33	6	39	1.79
650298--650327	14	2.1	14	100	0	60	23	40	6	30	1.80
650991--651084	42	2.3	41	82	8	111	41	12	28	17	1.86
651145--651283	37	3.8	37	89	2	199	41	16	21	20	1.91
651124--651463	78	4.4	78	68	16	204	40	14	23	20	1.90
651145--651282	73	1.9	74	87	1	206	41	16	21	21	1.90
651455--651684	59	3.9	59	91	2	354	29	18	24	26	1.98
651575--652353	160	4.9	154	80	11	856	26	19	28	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
651888--652195	55	5.4	55	81	9	314	25	21	26	26	1.99
651888--652816	116	8.2	110	74	15	573	25	19	27	26	1.99
652121--652297	94	1.8	96	87	11	263	23	19	30	26	1.98
652058--652349	154	1.9	154	91	3	480	23	19	29	27	1.98
652444--652528	27	3.1	27	64	21	68	29	17	24	28	1.97
652213--652812	177	3.5	175	88	7	813	25	19	27	27	1.99
652587--652675	26	3.2	28	63	13	67	26	20	26	25	1.99
652217--652811	232	2.5	228	87	7	867	25	19	27	27	1.99
658893--659028	53	2.6	50	78	11	148	36	13	24	26	1.92
658961--659545	79	7.4	79	91	0	931	31	14	25	27	1.95
660756--660909	35	4.4	35	91	4	231	20	31	5	42	1.76
660851--660915	14	4.1	14	72	24	58	21	35	6	36	1.79
660851--660950	49	2.0	49	92	3	166	21	32	6	41	1.77
660886--660915	14	2.1	14	100	0	60	23	40	6	30	1.80
663474--663508	17	2.1	17	88	0	52	0	17	0	82	0.66
668211--668250	2	20.5	2	94	5	73	52	0	0	47	1.00
668609--668925	34	9.4	34	87	1	433	24	8	27	40	1.83
668609--668925	67	4.7	67	87	1	420	24	8	27	40	1.83
668609--668925	101	3.1	101	95	1	548	24	8	27	40	1.83
669228--669290	19	3.3	19	90	0	90	28	17	19	34	1.94
673356--673573	34	6.5	34	88	1	296	24	7	27	40	1.82
673356--673575	67	3.3	67	88	1	323	24	7	27	40	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
674175--674230	26	2.3	24	77	14	60	32	1	3	62	1.23
674953--675017	22	2.9	21	76	15	60	61	3	0	35	1.12
675018--675097	35	2.2	38	80	19	98	47	0	3	48	1.19
675088--675133	23	2.1	22	84	8	58	58	4	0	36	1.18
675101--675165	23	2.8	23	77	11	69	58	7	3	30	1.42
675436--675794	119	2.9	122	83	10	441	43	2	1	52	1.24
675543--675630	45	1.9	45	80	15	101	43	3	0	53	1.17
676391--676590	91	2.2	92	88	1	303	42	6	14	36	1.72
676449--676732	142	2.0	142	90	4	444	41	7	16	35	1.75
676540--676645	55	1.9	55	92	3	178	40	9	17	32	1.82
676595--676758	87	1.9	88	88	5	251	42	7	14	35	1.74
676692--676898	70	2.9	70	90	4	335	41	8	16	33	1.79
676832--677165	88	3.8	87	79	13	394	41	8	16	34	1.78
676842--677171	84	3.7	89	81	14	389	41	7	16	34	1.77
676843--677171	177	1.9	172	89	6	518	41	7	16	34	1.77
676614--677488	407	2.1	409	94	3	1527	41	8	16	34	1.78
677099--677302	70	2.9	70	89	3	304	40	8	16	34	1.79
677239--677492	93	2.8	90	88	4	347	41	8	16	33	1.79
676920--677542	319	2.0	316	86	5	889	40	8	16	34	1.78
677419--677551	69	1.9	69	85	0	185	42	7	15	34	1.76
678197--678233	19	1.9	19	89	10	58	35	0	2	62	1.10
678505--678539	16	2.2	16	90	10	54	28	8	0	62	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
678748--678799	16	3.2	16	91	0	77	38	1	3	55	1.29
679522--679556	16	2.2	16	90	10	54	65	0	0	34	0.93
679538--679562	13	1.9	13	100	0	50	72	0	0	28	0.86
679879--679909	2	15.5	2	100	0	62	51	0	0	48	1.00
680574--680662	45	2.0	45	82	8	110	40	1	2	56	1.19
681943--681973	12	2.7	11	95	5	53	54	0	0	45	0.99
682444--682494	18	2.8	17	80	11	57	68	3	1	25	1.17
682415--682494	34	2.2	36	82	6	92	67	5	3	23	1.27
682971--683030	28	2.1	29	81	9	70	41	1	0	56	1.09
682981--683041	20	3.2	19	79	9	70	37	1	0	60	1.07
692081--692199	52	2.3	52	89	2	186	30	17	19	32	1.95
692256--692353	19	5.8	18	71	28	90	36	18	12	32	1.88
692275--692331	13	3.9	13	76	24	60	33	17	14	35	1.90
692254--692351	32	3.0	32	96	1	178	35	18	12	33	1.88
692383--692430	21	2.3	22	78	10	64	35	16	16	31	1.92
692781--692844	12	5.5	12	83	7	69	62	0	4	32	1.16
693088--693143	17	3.2	18	80	12	64	32	0	1	66	1.03
693835--693866	15	2.2	15	94	5	57	50	0	0	50	1.00
693828--693866	14	2.8	14	88	11	62	51	0	0	48	1.00
694168--694212	23	2.0	23	86	0	63	42	0	0	57	0.98
694894--694965	29	2.4	28	80	13	81	58	1	1	38	1.15
695183--695229	22	2.2	21	88	7	69	14	21	0	63	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
695533--695595	12	5.2	12	75	3	54	46	0	4	49	1.23
696764--696816	21	2.5	21	84	6	72	56	0	0	43	0.99
697736--697796	32	1.9	32	93	6	106	32	19	3	44	1.67
697892--697932	19	2.2	19	90	0	64	31	0	2	65	1.05
698336--698387	10	5.1	11	74	21	51	32	1	0	65	1.04
700318--700343	8	3.2	8	100	0	52	23	0	0	76	0.78
704713--704766	20	2.7	20	82	0	63	37	11	12	38	1.79
712256--712485	43	4.9	49	79	12	295	33	17	24	23	1.96
712245--712485	92	2.6	92	96	0	437	33	17	24	24	1.96
712485--712799	28	10.9	30	81	8	189	20	17	30	31	1.95

Tables:   1   2   3   4   5   6