genome.fa.s503.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold503
Parameters: 2 7 7 80 10 50 1000
Length:  995855

Tables:   1   2   3   4   5   6   7   

This is table  4  of  7  ( 749 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
466473--466535	25	2.5	25	77	12	74	42	1	0	55	1.09
466478--466538	26	2.4	26	83	8	81	42	1	0	55	1.09
467343--467382	21	1.9	21	94	0	71	47	0	17	35	1.48
468260--468312	27	1.9	28	88	3	81	32	3	16	47	1.65
476066--476096	16	1.9	16	93	0	53	48	16	19	16	1.81
482609--482652	21	2.2	20	83	4	52	38	15	0	45	1.47
484256--484313	31	1.9	31	89	3	91	29	17	13	39	1.88
484491--484581	44	2.1	42	88	8	130	42	0	16	40	1.48
486391--486429	20	2.0	19	95	5	69	35	23	10	30	1.88
486439--486463	13	1.9	13	100	0	50	32	16	16	36	1.90
486451--486503	20	2.6	21	82	8	65	37	15	16	30	1.90
488477--488522	23	2.0	24	86	4	67	76	0	17	6	1.00
494911--494984	36	2.1	36	82	7	89	72	8	12	6	1.26
496291--496812	32	16.3	32	93	1	850	31	33	18	16	1.93
498047--498092	23	2.0	24	86	4	67	76	0	17	6	1.00
505808--505832	13	1.9	13	100	0	50	32	16	16	36	1.90
508255--508293	20	2.0	19	95	5	69	35	23	10	30	1.88
508303--508327	13	1.9	13	100	0	50	32	16	16	36	1.90
508426--508451	13	2.0	13	100	0	52	38	15	15	30	1.88
508408--508471	33	2.0	32	87	3	92	39	18	14	28	1.90
512788--512843	20	2.9	19	82	10	62	51	3	1	42	1.29
512827--512867	16	2.6	16	78	21	50	60	2	0	36	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
513011--513071	16	3.8	16	75	16	63	50	22	13	13	1.75
513069--513145	16	4.9	16	69	15	63	45	25	11	16	1.82
513326--513376	21	2.4	21	81	12	68	35	1	1	60	1.19
513344--513383	20	2.0	21	85	5	55	35	5	0	60	1.19
515159--515226	34	2.0	35	85	8	95	41	1	0	57	1.08
515281--515339	14	4.3	14	77	18	52	44	1	0	54	1.10
515309--515364	24	2.3	25	84	6	71	48	5	0	46	1.25
515355--515400	15	3.0	15	84	6	56	36	0	0	63	0.95
516454--516592	11	12.5	11	64	9	50	53	0	2	43	1.17
516485--516589	33	3.2	31	70	20	79	59	0	1	38	1.15
516471--516563	28	3.3	29	71	18	72	53	0	3	43	1.16
516502--516611	33	3.3	33	71	24	104	55	0	1	41	1.16
524164--524189	2	13.0	2	100	0	52	50	0	0	50	1.00
526293--526342	21	2.3	22	86	3	66	60	4	4	32	1.34
526293--526344	14	3.6	14	76	2	50	59	3	3	32	1.33
526302--526344	7	6.1	7	86	0	50	60	2	4	32	1.30
527457--527486	15	2.0	15	93	0	51	43	0	6	50	1.28
532700--532771	20	3.6	20	84	0	90	34	11	9	44	1.73
537291--537345	21	2.7	20	80	5	65	47	16	10	25	1.79
539069--539116	23	2.1	22	85	14	62	35	2	2	60	1.20
541305--541347	2	21.5	2	100	0	86	51	0	0	48	1.00
541717--541795	34	2.4	34	86	2	106	46	3	1	48	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
541738--541816	34	2.3	34	82	0	95	46	7	3	41	1.50
541899--541962	27	2.5	25	82	7	76	25	7	21	45	1.78
542025--542058	13	2.6	13	90	0	59	17	47	5	29	1.71
544520--544565	21	2.1	22	84	4	58	30	19	30	19	1.97
546570--546601	13	2.5	13	89	0	55	18	46	6	28	1.73
548647--548693	24	2.0	24	83	4	60	44	6	6	42	1.55
550372--550434	32	1.9	32	83	3	81	52	0	0	47	1.00
550371--550434	15	3.8	17	73	12	51	53	0	0	46	1.00
550422--550471	15	3.4	15	77	5	57	62	0	0	38	0.96
550416--550464	24	2.0	24	84	0	62	55	0	0	44	0.99
552962--552995	9	3.7	9	84	7	50	50	0	0	50	1.00
552950--553008	18	3.1	18	81	18	59	50	1	1	45	1.21
552963--553053	5	19.0	5	71	17	50	42	2	0	54	1.12
552965--553043	19	3.9	19	70	22	63	43	0	0	56	0.99
554603--554634	2	16.0	2	100	0	64	50	0	0	50	1.00
561410--561489	42	2.0	40	87	5	115	43	6	3	46	1.46
561450--561488	16	2.4	16	100	0	78	46	5	0	48	1.24
561888--561921	15	2.2	15	89	5	50	47	0	2	50	1.16
562130--562213	16	5.2	16	77	5	71	39	30	15	14	1.87
562130--562213	32	2.6	32	80	10	100	39	30	15	14	1.87
563194--563308	16	7.2	16	76	3	115	41	31	15	11	1.82
563194--563286	48	1.9	48	89	4	143	39	32	17	10	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
563955--563997	19	2.1	21	91	8	72	23	2	2	72	1.08
564788--564825	2	19.0	2	100	0	76	50	0	0	50	1.00
570518--570826	156	2.0	156	86	3	435	26	12	9	51	1.69
571242--571291	19	2.6	19	77	3	55	28	18	18	36	1.94
571324--571377	20	2.7	20	83	11	67	31	14	16	37	1.89
571539--571567	13	2.2	13	100	0	58	27	6	13	51	1.66
577567--577592	13	2.0	13	100	0	52	30	15	15	38	1.88
580063--580116	20	2.7	20	97	0	99	35	24	14	25	1.94
581122--581528	157	2.6	155	80	8	495	33	14	24	28	1.94
581102--581528	79	5.5	77	77	9	384	33	13	24	28	1.93
581464--581632	51	3.3	50	81	6	180	32	11	26	29	1.91
583917--583973	20	2.8	20	84	5	71	40	14	14	31	1.85
584502--584555	20	2.7	20	91	0	81	33	12	16	37	1.87
585698--585759	11	5.5	11	76	16	56	75	0	22	1	0.88
585700--585747	16	2.9	16	81	9	53	75	0	25	0	0.81
585698--585756	24	2.6	23	83	5	75	74	0	23	1	0.91
597417--597502	30	2.9	28	78	15	75	25	19	9	45	1.80
597726--598151	44	9.7	43	74	5	325	21	22	15	41	1.90
597589--598150	132	4.2	131	82	2	622	20	21	15	41	1.90
598033--598200	88	1.9	88	80	4	196	20	21	19	38	1.93
600275--600320	14	3.6	13	77	13	51	78	0	21	0	0.76
605799--605833	5	7.0	5	100	0	70	80	0	0	20	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
608132--608202	31	2.3	31	100	0	142	16	5	30	46	1.70
610651--610743	20	4.7	20	86	5	116	31	15	11	41	1.83
613095--613168	28	2.7	27	83	8	87	21	28	22	27	1.99
613123--613309	82	2.3	80	89	1	275	26	21	16	35	1.94
613341--613459	51	2.3	51	82	0	148	31	28	10	29	1.91
613392--613538	79	1.9	79	82	0	186	28	29	12	28	1.94
615498--615522	2	12.5	2	100	0	50	48	0	0	52	1.00
618684--618870	79	2.4	79	83	1	223	31	16	28	23	1.96
618822--618893	28	2.6	28	88	0	99	23	19	34	22	1.96
621296--621350	20	2.8	20	82	0	74	45	16	14	23	1.84
621392--621448	13	3.9	13	76	24	60	35	15	14	35	1.88
621373--621467	32	3.0	32	96	0	172	36	14	12	35	1.85
621370--621469	19	5.9	19	73	25	98	38	14	12	36	1.83
631421--631496	36	2.1	36	83	9	93	52	2	0	44	1.14
631830--631877	24	2.0	24	87	0	69	47	0	2	50	1.12
632014--632081	31	2.3	29	76	14	68	54	0	1	44	1.09
632288--632387	20	4.7	20	69	29	64	49	0	2	49	1.12
632303--632371	16	4.4	16	74	18	65	50	0	1	47	1.09
632449--632480	16	2.0	17	88	11	50	50	0	0	50	1.00
633607--633633	3	9.0	3	100	0	54	66	0	0	33	0.92
633725--633750	3	8.7	3	100	0	52	69	0	0	30	0.89
633611--633839	113	2.0	113	90	2	361	35	9	10	44	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
633895--634052	82	2.0	80	96	2	289	40	14	11	33	1.82
634132--634186	18	2.7	20	75	18	51	49	0	0	50	1.00
634145--634187	21	2.2	20	88	12	63	48	0	0	51	1.00
634315--634356	21	2.0	22	85	4	59	45	0	0	54	0.99
640311--640348	20	1.9	19	85	15	51	21	0	5	73	1.02
640317--640368	21	2.4	21	84	12	61	23	3	5	67	1.29
644126--644151	13	2.0	13	100	0	52	30	15	15	38	1.88
644105--644169	32	2.0	33	93	6	114	27	12	15	44	1.82
644105--644169	19	3.6	19	73	26	70	27	12	15	44	1.82
646650--646687	13	2.9	13	96	0	67	31	15	18	34	1.92

Tables:   1   2   3   4   5   6   7