genome.fa.s503.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold503
Parameters: 2 7 7 80 10 50 1000
Length:  995855

Tables:   1   2   3   4   5   6   7   

This is table  3  of  7  ( 749 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
327225--327264	19	2.2	19	90	4	64	70	0	0	30	0.88
327883--327930	25	2.0	24	87	4	69	45	16	2	35	1.59
329860--330106	121	2.1	119	82	6	300	38	5	5	49	1.50
331223--331256	15	2.3	15	89	0	50	26	0	2	70	1.01
331256--331287	15	2.1	16	94	5	57	62	0	0	37	0.95
331953--332009	16	3.5	17	78	7	73	38	0	0	61	0.96
331954--332030	32	2.5	32	81	10	88	35	1	0	63	1.03
332627--332664	20	1.9	20	84	10	51	55	0	0	44	0.99
333143--333203	29	2.1	30	81	9	72	42	0	3	54	1.17
333306--333334	2	15.0	2	92	7	51	48	0	0	51	1.00
333753--333790	19	2.0	19	90	10	60	60	0	0	39	0.97
334699--334727	1	29.0	1	100	0	58	0	0	0	100	0.00
334964--334988	7	3.6	7	100	0	50	56	0	0	44	0.99
335064--335096	7	5.0	7	92	7	52	39	0	0	60	0.97
335064--335096	13	2.5	14	85	14	52	39	0	0	60	0.97
336160--336197	13	2.8	14	88	8	60	0	31	5	63	1.17
341789--341819	2	15.5	2	93	0	53	48	0	0	51	1.00
344629--344681	20	2.7	19	88	11	72	35	16	18	28	1.93
344666--344694	13	2.2	13	100	0	58	41	17	13	27	1.87
344648--344711	33	1.9	33	90	0	101	39	15	15	29	1.89
344781--344839	21	2.9	20	82	10	75	38	13	13	33	1.84
347406--347597	94	2.0	95	92	1	323	16	11	12	58	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
348940--348993	20	2.7	20	80	5	65	42	11	14	31	1.81
349000--349024	13	1.9	13	100	0	50	32	16	16	36	1.90
349731--350078	52	6.9	49	70	9	180	32	15	25	26	1.95
349921--350082	48	3.3	48	76	11	166	32	12	26	27	1.93
349894--350078	100	1.8	101	87	1	273	32	14	24	28	1.95
350148--350330	32	5.6	33	83	4	212	21	19	28	30	1.97
350148--350335	65	2.9	65	85	3	238	22	18	28	29	1.98
350262--350407	74	2.0	74	93	0	247	21	17	31	29	1.96
350336--350428	32	2.9	32	72	12	82	23	17	30	29	1.97
350406--350464	27	2.1	28	87	3	84	40	11	23	23	1.88
350429--350625	93	2.1	92	82	5	236	38	10	28	23	1.87
350502--350555	27	2.1	26	82	6	65	33	12	29	24	1.92
350435--350946	32	16.1	32	72	14	242	38	10	29	22	1.87
350842--351105	34	7.8	33	72	11	140	36	12	29	20	1.90
350405--351056	34	20.4	32	70	16	195	37	11	29	21	1.88
351019--351106	33	2.7	33	78	7	97	28	17	30	23	1.97
351081--351134	28	1.9	28	85	7	74	25	16	27	29	1.97
352452--352601	79	1.9	79	84	2	203	30	16	26	26	1.97
352538--352634	51	1.9	51	85	4	133	32	13	22	30	1.93
355048--355072	13	1.9	13	100	0	50	32	16	16	36	1.90
355028--355125	33	3.0	33	96	0	187	36	16	18	28	1.92
355006--355128	20	6.8	20	71	25	105	38	14	17	29	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
355006--355145	20	7.7	20	72	23	96	39	14	17	29	1.89
355762--355863	41	2.5	40	83	10	118	43	8	28	19	1.81
355880--356103	43	5.1	43	77	8	195	42	13	26	17	1.86
355920--356080	88	1.9	85	85	6	225	41	12	27	18	1.86
355920--356103	88	2.1	85	83	8	221	39	13	27	19	1.89
356090--357029	60	15.4	60	83	4	1019	27	19	28	24	1.99
356079--357028	183	5.2	181	88	3	1172	28	19	27	24	1.99
356079--357028	244	3.9	247	86	3	1174	28	19	27	24	1.99
365723--365796	20	3.7	19	85	7	94	43	13	14	28	1.84
370066--370136	20	3.5	20	84	0	97	42	14	9	33	1.78
371103--371196	20	4.7	20	89	5	127	35	9	19	36	1.84
371103--371196	40	2.3	40	88	0	143	35	9	19	36	1.84
374726--374796	8	8.1	8	73	17	52	66	0	1	32	1.01
374739--374796	19	3.2	18	83	13	66	70	0	1	27	0.97
375575--375619	19	2.6	17	82	10	56	37	0	0	62	0.96
375594--375632	14	2.7	15	84	4	53	33	2	0	64	1.08
375953--376019	28	2.5	26	75	15	64	34	0	4	61	1.16
375954--376023	35	2.1	35	81	5	81	35	0	4	60	1.17
375960--376017	27	2.2	26	81	9	64	34	0	5	60	1.19
376006--376110	16	6.3	16	69	16	61	37	0	3	58	1.23
376065--376102	11	3.5	11	88	0	58	31	0	2	65	1.06
376103--376142	20	2.0	20	85	5	53	47	10	0	42	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
376529--376577	21	2.3	21	80	16	57	38	6	2	53	1.38
376638--376670	8	4.2	8	84	7	50	39	0	0	60	0.97
376639--376671	15	2.2	15	94	0	57	42	0	0	57	0.98
378133--378157	12	2.1	12	100	0	50	28	8	16	48	1.74
378145--378212	15	4.6	15	80	10	77	44	10	10	35	1.73
379022--379060	20	2.0	19	85	5	51	66	0	0	33	0.92
379518--379556	18	2.2	18	100	0	78	43	0	10	46	1.37
379605--379641	2	18.5	2	100	0	74	51	0	0	48	1.00
381749--381812	31	2.1	30	82	8	76	46	6	1	45	1.37
388740--388789	15	3.3	15	82	0	64	18	10	40	32	1.83
391454--391525	20	3.8	20	78	17	73	36	16	9	37	1.82
391457--391523	35	1.9	35	87	0	98	34	17	10	37	1.85
396876--397004	20	6.8	20	67	19	71	37	12	16	33	1.86
404500--404564	29	2.3	28	84	7	78	26	20	30	23	1.98
404553--404722	52	3.3	51	77	8	164	32	12	25	29	1.93
404520--404864	185	1.9	184	87	4	516	31	12	26	28	1.93
404741--404859	51	2.3	53	85	7	154	33	11	22	31	1.90
404605--404855	133	1.9	132	81	8	305	31	13	25	28	1.94
407194--407258	33	2.0	33	87	0	94	43	13	15	27	1.85
407302--407326	13	1.9	13	100	0	50	32	16	16	36	1.90
407283--407345	32	2.0	32	93	0	108	36	14	12	36	1.84
407280--407347	19	3.9	19	76	21	76	38	13	11	36	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
407403--407459	21	2.7	21	97	0	105	36	19	10	33	1.86
408138--408828	55	12.3	55	87	6	869	23	20	28	27	1.99
408296--408383	26	3.3	26	68	20	81	19	18	35	27	1.95
409803--409866	1	64.0	1	74	0	56	1	0	10	87	0.61
409804--409867	13	4.7	14	83	12	80	1	0	12	85	0.66
409803--409866	14	4.6	14	83	12	80	1	0	10	87	0.61
409803--409866	28	2.3	27	87	10	94	1	0	10	87	0.61
422228--422295	29	2.4	28	87	7	93	26	19	29	25	1.98
422283--422416	52	2.6	50	80	8	160	32	11	25	30	1.91
422437--422511	27	2.7	27	89	6	107	22	20	33	24	1.97
422228--422622	213	1.9	212	88	4	609	31	13	26	29	1.94
422499--422617	51	2.3	53	85	7	154	33	11	22	31	1.90
424974--424999	13	2.0	13	100	0	52	38	15	15	30	1.88
424953--425019	33	2.0	33	88	0	98	43	16	14	25	1.86
425039--425138	19	5.9	18	73	26	103	38	15	12	35	1.84
425061--425117	13	3.9	13	76	24	60	35	15	14	35	1.88
425042--425136	32	3.0	32	98	0	181	36	15	12	34	1.86
425194--425250	21	2.7	21	97	0	105	36	19	10	33	1.86
453177--453221	23	2.0	23	82	8	56	37	22	8	31	1.85
453511--453705	97	2.0	95	89	2	291	23	17	17	42	1.89
453808--453888	19	4.5	19	73	19	75	45	12	11	30	1.76
456508--456544	13	2.8	13	91	0	56	32	16	16	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
460038--460128	46	2.0	47	95	2	166	18	24	12	45	1.83
460499--460524	3	8.7	3	100	0	52	30	34	0	34	1.58
462194--462243	20	2.5	20	87	3	75	42	10	16	32	1.81
464940--464982	18	2.5	17	80	3	59	53	0	2	44	1.13
465845--465931	9	9.1	10	71	22	71	59	0	0	40	0.97
465846--465941	27	3.5	28	74	22	87	61	0	0	38	0.96
465814--465951	39	3.6	38	78	14	131	58	0	0	41	0.98
465870--465934	29	2.2	29	89	7	105	61	0	0	38	0.96
465845--465936	19	4.8	19	71	25	70	60	0	0	39	0.97
466448--466489	21	2.1	19	86	8	57	66	0	0	33	0.92

Tables:   1   2   3   4   5   6   7