genome.fa.s56.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold56
Parameters: 2 7 7 80 10 50 1000
Length:  1793205

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  11  of  11  ( 1274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1683398--1683470	27	2.6	28	85	6	96	23	21	31	23	1.98
1683458--1683586	51	2.5	52	84	6	163	34	10	23	31	1.89
1685944--1685969	13	2.0	13	100	0	52	38	15	15	30	1.88
1685923--1685989	33	2.0	33	88	0	98	43	16	14	25	1.86
1686031--1686055	13	1.9	13	100	0	50	32	16	16	36	1.90
1686012--1686074	32	2.0	32	93	0	108	34	15	14	34	1.88
1686009--1686076	19	3.9	19	76	21	76	36	14	13	35	1.85
1686112--1686188	21	3.7	21	89	3	111	35	16	12	35	1.88
1686864--1686951	42	2.1	42	85	4	115	43	12	25	19	1.86
1686936--1687658	55	12.9	55	88	6	869	22	20	29	27	1.99
1694229--1694262	17	2.0	17	88	0	50	5	26	17	50	1.69
1701123--1701199	28	2.8	28	83	0	91	22	19	35	23	1.96
1701183--1701519	52	6.4	51	71	14	229	30	12	26	29	1.93
1701177--1701519	104	3.3	101	70	13	280	31	12	26	29	1.93
1701074--1701521	212	2.1	211	87	2	623	30	13	27	28	1.94
1701335--1701410	27	2.7	29	86	6	104	21	21	34	23	1.97
1701069--1701461	107	3.7	104	72	10	310	29	14	28	27	1.95
1701398--1701516	51	2.3	53	85	7	154	33	11	22	31	1.90
1703970--1703994	13	1.9	13	100	0	50	32	16	16	36	1.90
1703951--1704013	32	2.0	32	93	0	108	34	15	14	34	1.88
1703948--1704015	19	3.9	19	76	21	76	36	14	13	35	1.85
1708554--1708617	8	7.9	8	77	16	53	84	10	3	1	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1708563--1708617	13	4.5	11	77	18	56	85	10	3	0	0.72
1709864--1710435	28	19.9	28	82	5	626	29	30	17	22	1.96
1713622--1713672	27	2.0	26	85	11	70	25	29	15	29	1.96
1715243--1715619	89	4.3	88	85	3	481	31	17	16	35	1.92
1715243--1715619	175	2.1	176	84	3	499	31	17	16	35	1.92
1715624--1715758	5	27.2	5	75	18	95	51	0	0	47	1.11
1715624--1715768	29	4.9	29	76	17	113	50	0	0	48	1.10
1722163--1722211	20	2.5	20	86	3	64	38	16	14	30	1.88
1723548--1723614	20	3.3	20	85	0	98	32	14	11	40	1.83
1731103--1731128	13	2.0	13	100	0	52	38	15	15	30	1.88
1731081--1731148	33	2.1	33	88	2	102	32	14	19	33	1.92
1731229--1731253	13	1.9	13	100	0	50	36	16	16	32	1.90
1739895--1739962	33	2.1	32	88	2	100	33	13	17	35	1.89
1740043--1740067	13	1.9	13	100	0	50	36	16	16	32	1.90
1752741--1752795	20	2.8	20	86	2	76	34	12	18	34	1.89
1754581--1754605	11	2.3	11	100	0	50	92	8	0	0	0.40
1755563--1755602	2	20.0	2	100	0	80	50	0	0	50	1.00
1756042--1756108	24	2.8	22	75	20	64	41	10	4	43	1.59
1756601--1756639	20	2.1	19	85	9	53	30	10	5	53	1.56
1759308--1759351	12	3.7	12	93	0	70	50	9	0	40	1.34
1759310--1759351	2	21.0	2	85	0	57	50	7	0	42	1.30
1759310--1759348	16	2.4	16	95	0	69	51	7	0	41	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1760887--1760939	27	2.0	27	85	7	74	37	11	7	43	1.69
1761078--1761138	19	3.3	18	76	13	54	42	1	6	49	1.38
1763803--1763861	25	2.4	24	80	5	73	54	0	0	45	0.99
1764050--1764132	34	2.4	34	80	13	91	39	2	3	54	1.31
1764285--1764337	21	2.6	21	85	8	65	41	3	0	54	1.18
1766316--1766357	21	2.0	21	86	9	59	54	0	0	45	0.99
1766306--1766357	17	3.1	17	78	10	61	53	0	0	46	1.00
1766488--1766563	38	2.0	38	100	0	152	15	15	15	52	1.75
1766550--1766586	13	2.8	13	87	4	56	0	13	2	83	0.74
1766947--1767040	47	2.0	46	87	2	134	34	6	21	38	1.79
1767150--1767187	11	3.4	11	83	16	51	57	0	0	42	0.98
1767307--1767352	20	2.2	21	92	7	85	50	4	17	28	1.65
1768477--1768503	2	13.5	2	100	0	54	51	0	0	48	1.00
1769056--1769085	16	1.9	15	93	6	51	53	13	0	33	1.40
1770048--1770085	2	19.5	2	94	5	69	50	0	0	50	1.00
1770772--1770803	2	16.0	2	100	0	64	50	0	0	50	1.00
1771095--1771123	2	14.5	2	100	0	58	48	0	0	51	1.00
1772620--1772679	20	3.0	20	92	0	93	43	1	1	53	1.20
1774600--1774628	2	14.5	2	100	0	58	48	0	0	51	1.00
1775815--1776037	77	2.8	77	84	6	270	26	21	15	36	1.93
1775773--1776061	79	3.7	79	80	7	311	26	22	14	35	1.93
1777335--1777409	20	3.8	20	76	0	78	34	12	12	41	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1777335--1777412	40	2.0	39	84	2	102	34	11	12	41	1.80
1778323--1778379	22	2.5	23	94	5	98	17	10	10	61	1.56
1778341--1778386	22	2.2	21	84	7	58	21	10	10	56	1.64
1779775--1780521	55	13.3	55	84	6	960	25	20	27	27	1.99
1779812--1779901	26	3.3	26	66	19	67	20	18	33	27	1.96
1779775--1780521	170	4.4	171	93	3	1185	25	20	27	27	1.99
1781499--1781549	10	5.6	9	77	11	50	0	7	7	84	0.78
1781514--1781549	10	3.7	10	88	3	56	0	8	5	86	0.72

Tables:   1   2   3   4   5   6   7   8   9   10   11

The End!