genome.fa.s56.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold56
Parameters: 2 7 7 80 10 50 1000
Length:  1793205

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  6  of  11  ( 1274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
852106--852154	18	2.7	18	90	6	73	85	8	6	0	0.73
852105--852153	14	3.6	13	78	15	55	85	10	4	0	0.71
853175--853259	37	2.3	37	100	0	170	25	15	15	43	1.86
853619--854025	28	14.6	27	81	12	421	32	30	17	20	1.95
853624--854025	56	7.2	56	90	0	615	32	30	17	19	1.95
854045--854353	52	6.0	51	77	8	272	25	25	14	34	1.94
854045--854353	101	3.0	100	79	7	327	25	25	14	34	1.94
855046--855102	20	2.8	20	94	0	96	40	15	8	35	1.79
855089--855116	13	2.2	13	100	0	56	28	14	17	39	1.89
868858--868914	30	1.9	30	92	0	96	43	12	15	28	1.83
878715--878750	18	2.0	18	100	0	72	27	11	5	55	1.57
879022--879155	50	2.7	50	84	5	173	30	15	12	41	1.85
880038--880078	21	2.0	21	90	4	66	19	12	17	51	1.76
883098--883123	13	2.0	13	100	0	52	38	15	15	30	1.88
884124--884149	13	2.0	13	100	0	52	38	15	15	30	1.88
884105--884169	33	2.0	33	87	6	96	41	16	13	27	1.87
885180--885808	171	3.7	165	84	8	780	24	20	27	28	1.99
885180--885839	116	5.7	114	84	9	805	24	20	26	27	1.99
885180--885808	55	11.0	55	84	7	760	24	20	27	28	1.99
886796--886857	11	5.6	11	88	3	63	0	9	8	82	0.85
891779--891835	19	2.9	19	86	2	78	31	15	15	36	1.90
893387--893417	15	2.1	15	93	0	53	45	0	25	29	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
897961--897987	13	2.1	13	100	0	54	29	14	14	40	1.86
904733--904793	9	7.1	9	72	10	56	11	44	1	42	1.50
904738--904772	12	2.9	12	84	16	54	11	48	0	40	1.39
904705--904823	42	2.8	42	92	0	193	10	46	0	42	1.43
907136--907162	13	2.1	13	100	0	54	29	14	14	40	1.86
907119--907181	32	1.9	33	87	9	94	28	15	14	41	1.87
907146--907199	19	2.8	19	88	2	81	31	18	14	35	1.91
907231--907284	20	2.7	20	82	8	74	40	12	14	31	1.84
915847--915881	2	17.5	2	100	0	70	51	0	0	48	1.00
916222--916503	155	1.8	155	87	3	424	35	18	11	34	1.87
917881--917913	14	2.3	15	94	5	59	84	0	0	15	0.61
917890--917962	29	2.7	26	76	12	74	72	4	2	20	1.14
917879--917954	38	1.9	41	86	7	113	73	3	2	19	1.11
918886--918936	22	2.3	22	83	12	61	78	3	17	0	0.90
918886--918932	19	2.3	21	85	10	62	78	4	17	0	0.90
924623--924697	20	3.8	19	78	7	87	41	12	13	33	1.81
924620--924697	40	2.0	39	89	2	120	41	12	12	33	1.82
925257--926261	29	34.3	29	83	7	1153	20	16	33	29	1.95
925257--926257	350	2.8	350	87	4	1376	20	16	33	29	1.95
927332--927398	7	8.6	8	82	11	61	1	4	5	88	0.70
927343--927398	1	56.0	1	81	0	67	0	3	5	91	0.52
927332--927398	17	3.8	17	82	11	73	1	4	5	88	0.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
934871--934907	18	2.1	18	94	0	65	29	8	21	40	1.82
937119--937158	19	2.1	19	85	0	53	70	7	10	12	1.35
941404--941475	20	3.6	19	74	10	65	41	12	12	33	1.80
941397--941475	40	2.0	39	87	7	115	41	12	12	32	1.81
942082--942643	28	19.5	29	83	7	659	20	16	33	30	1.94
942082--942643	57	9.8	57	81	9	626	20	16	33	30	1.94
945028--945069	16	2.6	16	75	14	50	23	14	14	47	1.80
946878--946945	12	5.7	11	79	10	55	48	0	0	51	1.00
947534--947569	16	2.3	16	90	4	56	63	2	2	30	1.22
950970--951027	27	2.1	27	83	0	71	58	0	1	39	1.08
950985--951024	21	1.9	21	94	0	71	57	0	2	40	1.12
951117--951209	35	2.6	34	82	16	100	62	0	1	36	1.03
953931--953961	16	2.0	15	93	6	53	64	0	0	35	0.94
953897--953959	24	2.5	25	74	7	65	60	3	0	36	1.13
954944--954968	12	2.1	12	100	0	50	64	16	0	20	1.30
955322--955360	17	2.3	17	86	8	53	69	0	2	28	1.02
956180--956233	20	2.7	20	82	0	63	37	12	11	38	1.79
957812--957850	3	13.0	3	88	0	60	38	0	30	30	1.58
967721--967864	68	2.1	68	88	0	207	22	12	30	34	1.91
971333--971382	20	2.5	20	86	0	64	38	16	16	30	1.90
973643--973683	22	2.0	21	86	13	59	41	4	21	31	1.74
973805--973843	13	3.0	13	96	0	69	35	15	17	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
975917--975947	15	2.1	15	93	0	53	19	22	16	41	1.89
980004--980054	20	2.6	20	84	9	61	27	11	17	43	1.84
980127--980154	13	2.2	13	100	0	56	39	14	14	32	1.86
980109--980171	33	1.9	33	86	0	90	38	15	15	30	1.89
986815--986841	13	2.1	13	100	0	54	29	14	14	40	1.86
988535--988565	3	10.3	3	92	0	53	35	0	35	29	1.58
993090--993116	13	2.1	13	100	0	54	40	14	14	29	1.86
995529--995554	13	2.0	13	100	0	52	30	15	15	38	1.88
995539--995595	19	2.9	19	87	10	80	29	15	17	36	1.91
1000235--1000259	13	1.9	13	100	0	50	36	16	16	32	1.90
1001915--1001940	13	2.0	13	100	0	52	38	15	15	30	1.88
1005477--1005549	27	2.7	27	95	0	128	20	31	19	28	1.97
1007540--1007748	79	2.6	79	78	5	226	37	12	20	29	1.89
1007710--1007810	44	2.3	44	96	0	184	23	13	32	29	1.94
1007816--1007942	50	2.5	49	87	2	164	33	14	28	24	1.94
1007865--1008319	79	5.7	79	83	6	528	34	12	25	27	1.92
1007874--1008319	238	1.9	237	87	6	663	33	13	25	28	1.93
1007876--1008322	159	2.8	158	81	7	566	33	12	25	27	1.93
1010675--1010790	50	2.3	50	89	2	171	40	13	18	27	1.88
1013614--1013718	52	2.0	52	96	0	192	32	17	11	39	1.85
1014175--1014228	26	2.1	26	92	0	90	40	5	29	24	1.77
1014221--1014280	32	2.0	30	87	9	86	35	13	21	30	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1018910--1018944	2	17.5	2	100	0	70	48	0	0	51	1.00
1020585--1020623	20	2.0	20	84	0	51	30	2	20	46	1.64
1020623--1020660	20	1.9	20	100	0	76	50	13	15	21	1.78
1020625--1020668	20	2.2	20	87	0	61	50	15	15	18	1.79
1024673--1024715	17	2.6	16	78	10	50	39	2	0	58	1.11
1032846--1032892	24	2.0	24	86	0	67	46	2	8	42	1.46
1033354--1033385	2	16.0	2	100	0	64	50	0	0	50	1.00
1035409--1035459	20	2.5	20	96	0	93	33	17	11	37	1.86
1035523--1035571	19	2.5	20	90	3	73	38	16	16	28	1.90
1036259--1036317	19	3.1	19	67	26	52	37	23	0	38	1.55
1036234--1036322	38	2.3	39	94	3	153	37	24	0	38	1.56
1042859--1042892	3	11.3	3	93	0	59	29	32	0	38	1.58
1045746--1045890	51	2.8	51	83	5	184	31	10	26	31	1.90
1046033--1046153	51	2.4	51	86	6	156	34	11	23	30	1.90
1046580--1046608	12	2.4	12	100	0	58	55	0	20	24	1.44
1048515--1048540	13	2.0	13	100	0	52	38	15	15	30	1.88
1048494--1048624	33	4.0	33	67	12	99	41	13	16	28	1.87
1048579--1048604	13	2.0	13	100	0	52	38	15	15	30	1.88
1048656--1048718	19	3.7	18	76	24	73	36	17	12	33	1.88
1048649--1048720	32	2.2	32	97	0	135	36	16	12	34	1.87
1048675--1048699	13	1.9	13	100	0	50	32	16	16	36	1.90
1049357--1049453	42	2.3	42	77	8	101	42	12	28	16	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1049546--1050223	55	12.0	55	84	8	742	25	20	27	26	1.99
1049592--1049681	26	3.3	26	68	14	74	22	18	31	27	1.97
1049545--1050161	226	2.7	223	87	6	874	24	20	27	27	1.99
1049846--1049936	29	3.2	29	62	14	73	24	18	29	27	1.98
1072805--1073054	57	4.3	57	82	10	294	26	21	26	25	2.00
1086437--1086632	78	2.5	78	84	2	223	28	16	30	24	1.97
1086589--1086665	28	2.8	28	86	7	95	22	18	35	24	1.96
1086649--1086793	51	2.8	51	87	1	200	33	8	25	33	1.86
1086828--1086905	27	2.9	27	84	5	104	25	19	32	23	1.98
1086886--1087006	51	2.4	51	84	6	147	34	10	23	31	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11