genome.fa.s58.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold58
Parameters: 2 7 7 80 10 50 1000
Length:  1582273

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  10  of  10  ( 1168 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1500909--1500934	13	2.0	13	100	0	52	38	15	15	30	1.88
1500888--1500954	33	2.0	33	88	0	98	43	14	14	26	1.85
1501065--1501121	21	2.7	21	97	0	105	36	19	10	33	1.86
1505502--1505529	2	14.0	2	100	0	56	50	0	0	50	1.00
1507141--1507166	13	2.0	13	100	0	52	46	0	0	53	1.00
1508819--1508853	17	2.1	17	88	0	52	65	2	0	31	1.07
1508917--1508954	17	2.2	18	90	4	60	47	0	0	52	1.00
1509407--1509483	29	2.7	29	78	13	88	46	1	0	51	1.09
1510336--1510375	20	2.0	20	85	9	55	45	0	0	55	0.99
1510335--1510382	21	2.3	21	78	7	53	45	0	0	54	0.99
1516564--1516613	19	2.6	18	81	12	55	66	2	0	32	1.03
1516564--1516604	20	2.0	22	90	9	68	60	2	0	36	1.10
1516556--1516601	11	4.3	11	75	13	51	65	2	0	32	1.05
1516872--1516923	23	2.2	24	82	3	61	71	3	0	25	1.03
1517598--1517649	14	3.4	14	80	17	59	67	0	0	32	0.91
1518796--1519022	21	11.0	21	74	11	166	55	7	4	32	1.50
1518891--1519036	40	3.6	39	85	9	170	57	6	3	32	1.42
1518874--1519046	61	2.8	60	81	11	174	54	6	3	34	1.44
1518927--1519032	11	10.1	11	74	16	73	56	5	2	34	1.37
1518828--1519152	21	15.9	20	74	14	231	52	7	4	35	1.49
1520475--1520549	39	1.9	38	86	10	107	54	9	2	33	1.46
1525460--1525497	18	2.1	19	85	5	51	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1525475--1525515	16	2.5	17	88	7	59	43	0	0	56	0.99
1526571--1526600	16	1.9	16	93	6	53	73	3	6	16	1.18
1526571--1526608	16	2.4	16	86	8	51	73	2	10	13	1.19
1528980--1529017	16	2.4	16	82	4	51	15	34	23	26	1.95
1537483--1537514	16	2.0	16	93	0	55	9	12	34	43	1.75
1537658--1537712	18	2.9	19	81	13	60	43	0	1	54	1.10
1537687--1537726	18	2.2	18	90	0	62	50	0	2	47	1.14
1539699--1539790	32	2.8	36	80	14	108	40	1	2	56	1.18
1540087--1540111	9	2.8	9	100	0	50	60	0	0	40	0.97
1540082--1540130	8	5.9	8	79	9	53	69	0	0	30	0.89
1542475--1542531	19	3.0	20	79	7	73	33	14	17	35	1.90
1542560--1542610	20	2.5	20	90	6	77	31	11	19	37	1.88
1544419--1544475	18	3.2	17	88	11	80	56	1	0	42	1.10
1544628--1544664	6	6.2	6	96	0	56	35	21	16	27	1.94
1544780--1544814	16	2.2	16	89	0	52	62	11	0	25	1.28
1544911--1544942	2	16.0	2	100	0	64	50	0	0	50	1.00
1545069--1545093	12	2.1	12	100	0	50	24	0	0	76	0.80
1545061--1545102	20	2.1	20	82	8	50	26	0	2	71	0.98
1545232--1545296	31	2.1	32	85	2	87	33	7	1	56	1.37
1545442--1545484	21	2.0	22	86	4	61	37	0	2	60	1.10
1548440--1548478	5	8.0	5	94	5	71	20	38	20	20	1.94
1549294--1549324	5	6.2	5	92	0	53	38	0	3	58	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1550535--1550575	11	3.6	12	80	12	50	51	0	0	48	1.00
1554602--1554626	2	12.5	2	100	0	50	52	0	0	48	1.00
1555107--1555160	15	3.4	16	82	12	67	50	0	0	50	1.00
1555107--1555158	16	3.3	15	82	15	61	50	0	0	50	1.00
1555133--1555197	22	2.9	23	75	11	71	46	3	0	50	1.17
1555171--1555272	47	2.1	50	81	12	117	49	0	0	49	1.14
1555461--1555495	16	2.1	17	89	5	54	40	0	0	60	0.97
1555698--1555736	20	1.9	21	89	5	62	56	0	0	43	0.99
1555988--1556024	14	2.4	16	86	13	51	40	0	0	59	0.97
1556970--1557687	173	4.1	173	81	5	607	45	6	5	41	1.53
1556970--1557695	171	4.2	173	81	5	713	45	6	5	42	1.53
1556970--1557695	349	2.1	345	81	5	806	45	6	5	42	1.53
1557820--1557897	29	2.7	29	79	2	75	44	3	7	43	1.51
1559192--1559230	2	19.5	2	100	0	78	0	48	0	51	1.00
1559602--1559645	23	1.9	23	81	9	54	50	9	11	29	1.69
1562502--1562548	22	2.1	22	84	0	58	38	0	2	59	1.09
1563371--1563429	16	3.6	16	72	19	50	42	3	3	50	1.35
1564755--1564793	6	6.5	6	90	0	60	61	0	0	38	0.96
1564761--1564799	12	3.4	11	86	10	51	61	0	0	38	0.96
1567081--1567129	22	2.3	21	86	10	73	57	0	2	40	1.10
1567081--1567132	21	2.5	22	90	6	81	57	0	1	40	1.10
1567658--1567726	26	2.7	26	80	10	79	47	4	1	46	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1567867--1567910	18	2.5	17	82	10	61	36	0	0	63	0.95
1568096--1568152	26	2.2	26	81	12	64	45	1	1	50	1.22
1568666--1568709	18	2.5	18	85	3	54	56	0	6	36	1.26
1569524--1569576	27	2.0	27	85	7	72	66	11	1	20	1.33
1570064--1570124	8	7.1	8	78	14	52	40	0	1	57	1.08
1570069--1570124	22	2.5	23	77	8	62	41	0	1	57	1.09
1570096--1570161	16	4.1	17	74	25	56	43	0	0	56	0.99
1575124--1575148	4	6.2	4	100	0	50	76	0	0	24	0.80
1576056--1576100	14	2.9	16	77	12	58	53	2	0	44	1.13
1576051--1576117	30	2.3	29	86	2	89	56	1	0	41	1.08
1576443--1576467	6	4.2	6	100	0	50	20	16	32	32	1.94
1577495--1577533	11	3.4	11	83	13	51	61	0	0	38	0.96
1579686--1579713	13	2.2	13	100	0	56	78	0	0	21	0.75
1579734--1579809	25	3.1	24	76	14	75	68	2	0	28	1.03
1579870--1579903	17	1.9	17	94	5	59	82	8	8	0	0.85
1580372--1580405	11	3.1	11	84	16	52	70	2	0	26	1.01
1580364--1580421	22	2.6	23	81	8	66	62	3	6	27	1.37
1580657--1580701	18	2.4	20	75	24	53	51	0	0	48	1.00
1580666--1580711	17	2.8	17	75	18	53	56	0	0	43	0.99
1581060--1581114	23	2.4	23	82	11	69	72	5	1	20	1.13
1581224--1581257	13	2.6	13	95	0	59	5	11	0	82	0.83
1581545--1581585	21	1.9	22	85	5	57	48	9	9	31	1.69

Tables:   1   2   3   4   5   6   7   8   9   10

The End!