genome.fa.s58.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold58
Parameters: 2 7 7 80 10 50 1000
Length:  1582273

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  3  of  10  ( 1168 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
305029--305149	52	2.3	52	97	0	224	28	18	18	34	1.94
305029--305169	52	2.7	51	90	4	212	30	17	18	33	1.94
305158--305182	13	1.9	13	100	0	50	36	16	16	32	1.90
305247--305271	13	1.9	13	100	0	50	32	16	16	36	1.90
305225--305291	33	2.0	33	88	0	98	40	13	11	34	1.81
307902--307958	21	2.8	21	91	2	89	45	10	17	26	1.81
308623--308834	119	1.8	116	80	11	252	41	14	23	20	1.89
308864--308953	26	3.3	26	66	14	74	21	18	32	27	1.97
308818--309531	55	12.3	59	84	9	841	23	20	29	25	1.99
308817--309508	116	6.0	114	85	8	845	23	20	30	25	1.99
309424--309508	29	3.0	29	63	22	72	18	21	34	25	1.96
310524--310550	12	2.2	12	100	0	54	0	0	14	85	0.61
323091--323167	28	2.8	28	85	0	91	22	19	35	23	1.96
323151--323588	52	8.4	52	74	9	291	32	12	25	29	1.92
323296--323424	51	2.5	52	86	3	154	34	13	24	27	1.94
323408--323479	27	2.6	28	82	12	96	19	19	36	25	1.95
323151--323590	104	4.2	103	70	11	329	32	12	25	29	1.92
326341--326538	107	1.9	105	81	2	243	35	8	8	47	1.64
327023--327053	2	15.5	2	100	0	62	51	0	0	48	1.00
327477--327518	16	2.5	17	84	7	59	38	4	0	57	1.20
328477--328535	23	2.4	26	83	8	70	18	6	3	71	1.23
329270--329299	15	2.0	15	93	0	51	36	0	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
329934--330415	210	2.3	210	81	7	525	44	5	5	44	1.49
329934--330410	106	4.5	104	81	7	509	44	5	5	44	1.48
332201--332232	14	2.3	14	100	0	64	43	0	0	56	0.99
332704--332746	3	14.3	3	95	0	77	65	2	0	32	1.06
333125--333165	12	3.4	12	82	0	55	29	9	17	43	1.80
334025--334061	18	2.0	20	89	10	60	43	0	0	56	0.99
342692--342744	21	2.5	21	87	0	70	43	3	20	32	1.70
342709--342752	21	2.1	21	82	0	52	40	4	15	38	1.68
350750--350798	22	2.2	22	85	7	64	57	0	0	42	0.99
351210--351256	16	2.8	17	81	15	53	55	0	0	44	0.99
351184--351236	25	2.1	26	85	3	72	54	0	1	43	1.11
351210--351254	17	2.8	16	83	12	56	53	0	0	46	1.00
351859--351909	25	2.0	26	84	3	68	66	0	33	0	0.92
352522--352617	16	6.0	16	72	8	52	41	35	14	8	1.76
353117--353146	16	1.9	15	93	6	51	53	0	16	30	1.44
363678--363755	27	2.9	27	90	0	120	21	8	23	46	1.79
363683--363767	27	3.1	26	81	8	98	21	8	22	48	1.76
363683--363777	27	3.7	24	76	16	93	23	8	22	46	1.79
368238--368315	27	2.9	27	86	0	102	24	7	21	46	1.77
368243--368337	27	3.7	25	81	6	86	24	7	22	46	1.77
369477--369536	27	2.3	26	80	8	68	51	0	0	48	1.00
369561--369608	25	1.9	25	83	8	62	25	0	4	70	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
369574--369606	17	1.9	17	88	11	50	24	0	3	72	0.98
369802--369894	14	6.6	14	70	16	57	51	0	0	48	1.00
369810--369905	44	2.2	44	87	7	135	54	0	0	45	0.99
370967--371018	20	2.8	18	77	11	59	59	1	0	38	1.08
371403--371473	16	4.3	17	75	18	62	38	0	1	60	1.06
371426--371477	18	3.0	17	81	18	63	40	0	0	59	0.97
380749--380822	37	2.0	37	97	2	141	28	27	12	32	1.92
382517--382557	3	13.7	3	94	0	73	29	0	2	68	1.03
385150--385246	20	4.8	20	78	5	115	32	13	11	42	1.80
387453--387694	97	2.5	97	87	0	342	27	28	12	31	1.93
389889--389954	24	2.6	25	77	15	73	24	16	34	24	1.95
392521--393135	64	9.8	62	88	4	810	25	27	20	27	1.99
392521--393135	190	3.3	189	86	4	836	25	27	20	27	1.99
392521--393135	126	4.9	125	86	4	823	25	27	20	27	1.99
393116--393440	43	7.4	43	80	8	289	20	25	12	42	1.86
393323--393420	42	2.6	36	72	20	90	15	24	11	48	1.77
393444--393542	40	2.4	41	80	9	114	16	29	10	44	1.80
394125--394181	20	2.8	20	91	0	96	26	15	14	43	1.85
394163--394192	13	2.3	13	94	0	51	33	16	10	40	1.82
394208--394261	20	2.7	20	82	5	65	25	16	14	42	1.87
396598--396765	79	2.1	79	88	2	248	28	23	13	34	1.93
396729--396801	28	2.6	28	82	4	94	23	27	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
396833--396909	28	2.8	26	84	7	91	20	31	23	24	1.98
396650--396956	107	2.9	107	83	5	361	27	23	15	33	1.95
397339--397363	13	1.9	13	100	0	50	32	16	16	36	1.90
397372--397500	52	2.5	52	93	2	215	36	16	17	30	1.91
401880--401936	21	2.8	20	72	17	53	15	1	7	75	1.10
401888--401989	16	6.5	16	72	16	88	17	0	7	74	1.05
401896--401924	13	2.2	13	100	0	58	20	0	6	72	1.07
401891--402005	31	3.7	31	76	15	121	20	0	6	73	1.06
401951--401979	14	2.1	14	93	6	51	20	0	6	72	1.07
401948--402006	23	2.4	25	78	13	70	20	0	5	74	1.00
401893--401989	8	12.5	8	67	18	62	17	0	8	74	1.06
401888--402006	17	7.6	16	69	23	67	19	0	6	73	1.04
403347--403417	35	2.0	35	83	5	90	25	30	9	33	1.88
403779--403816	20	2.0	20	89	5	60	34	21	7	36	1.82
403887--403943	22	2.6	22	91	0	87	42	10	17	29	1.83
410464--410587	52	2.4	51	93	4	205	29	17	18	34	1.94
410464--410607	52	2.8	50	84	13	177	30	17	18	33	1.94
410596--410620	13	1.9	13	100	0	50	36	16	16	32	1.90
410685--410709	13	1.9	13	100	0	50	32	16	16	36	1.90
410663--410729	33	2.0	33	88	0	98	40	13	11	34	1.81
411472--411817	48	7.0	52	83	8	309	31	17	26	24	1.97
411536--411818	48	5.9	48	87	6	414	30	18	26	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
411536--411820	97	3.0	97	89	5	420	30	17	27	24	1.97
411953--412021	22	3.2	22	64	32	58	28	18	23	28	1.98
411944--412011	21	3.2	21	65	19	59	27	17	27	26	1.98
411965--412033	22	3.2	22	65	19	63	30	17	26	26	1.97
411899--413489	49	32.7	49	87	3	2159	30	17	26	25	1.98
411899--413489	489	3.3	489	93	2	2565	30	17	26	25	1.98
413489--413628	33	4.2	34	94	5	252	19	17	35	28	1.94
413489--413628	67	2.1	67	97	2	266	19	17	35	28	1.94
413630--414371	34	22.8	34	82	11	731	30	13	36	20	1.90
413630--414371	101	7.6	99	84	8	736	30	13	36	20	1.90
413933--413987	27	2.0	27	85	0	74	27	16	34	21	1.95
414029--414380	61	5.6	61	81	12	316	28	13	36	21	1.91
414312--414407	34	2.8	34	87	3	131	30	14	34	20	1.93
414383--414498	31	3.7	31	82	10	148	25	19	28	25	1.99
414385--414498	30	3.7	31	80	14	137	24	20	28	26	1.99
415825--415897	12	5.6	13	87	8	96	0	0	13	86	0.58
415825--415897	27	2.8	26	82	17	98	0	0	13	86	0.58
415825--415897	1	73.0	1	72	0	56	0	0	13	86	0.58
422787--422910	52	2.4	51	93	4	205	29	18	18	33	1.95
423008--423032	13	1.9	13	100	0	50	32	16	16	36	1.90
422986--423052	33	2.0	33	88	0	98	40	13	11	34	1.81
423452--423585	67	2.0	67	95	0	241	38	5	22	33	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
424935--425043	51	2.1	51	83	6	141	40	12	14	32	1.84
429606--429630	3	8.3	3	100	0	50	32	0	0	68	0.90
435555--435883	80	4.1	82	77	7	291	35	11	24	29	1.90
435579--435912	160	2.1	161	81	6	392	35	11	23	29	1.90
435579--435963	80	4.8	79	75	9	253	35	10	24	29	1.89
436050--436235	81	2.3	81	83	4	223	34	11	25	28	1.91
438394--438432	12	3.2	12	81	3	51	2	10	2	84	0.81
441149--441246	33	3.0	33	81	3	126	38	9	15	36	1.79
446208--446261	20	2.7	20	88	2	72	35	14	9	40	1.78
446607--446640	2	17.5	2	87	6	52	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10