genome.fa.s58.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold58
Parameters: 2 7 7 80 10 50 1000
Length:  1582273

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  5  of  10  ( 1168 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
601092--601245	79	1.9	79	81	5	186	27	27	14	30	1.95
601223--601295	28	2.6	27	82	6	101	24	28	17	28	1.98
601254--601419	79	2.1	79	84	8	214	30	25	12	31	1.92
601093--601427	186	1.8	186	82	6	437	28	26	14	31	1.95
602639--602723	32	2.7	32	78	7	91	28	18	15	37	1.91
603147--603199	23	2.3	23	90	0	79	32	30	0	37	1.58
603156--603205	23	2.3	20	81	18	73	40	30	0	30	1.57
606092--606229	38	3.6	38	79	5	138	38	17	10	33	1.85
607115--607153	20	2.0	20	85	5	53	38	5	5	51	1.46
613493--613529	18	2.0	19	94	5	67	48	0	0	51	1.00
620157--620194	17	2.2	18	85	4	51	44	10	10	34	1.73
620253--620434	57	3.3	55	72	13	162	30	28	13	28	1.94
620385--620487	51	2.0	51	86	0	143	33	33	13	19	1.91
627103--627169	33	2.0	33	88	0	98	34	11	13	40	1.81
627123--627147	13	1.9	13	100	0	50	36	16	16	32	1.90
627210--627234	13	1.9	13	100	0	50	32	16	16	36	1.90
627243--627362	52	2.3	52	95	0	213	35	19	17	28	1.94
636585--636709	43	2.9	43	85	0	160	33	10	11	44	1.74
636705--636829	58	2.2	57	79	4	133	31	9	14	44	1.77
638966--639204	75	3.0	75	85	12	352	38	20	14	27	1.91
641542--641587	21	2.1	22	84	4	58	19	30	19	30	1.97
644033--644078	20	2.3	20	84	0	56	32	4	52	10	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
646328--646364	2	18.5	2	100	0	74	51	0	0	48	1.00
646911--646941	16	2.0	15	93	6	53	19	22	12	45	1.84
646986--647023	20	2.0	19	85	10	51	31	13	13	42	1.82
647011--647036	13	2.0	13	100	0	52	30	15	23	30	1.95
650804--650828	13	1.9	13	100	0	50	36	16	16	32	1.90
651663--651714	21	2.5	21	96	0	95	38	3	23	34	1.73
656176--656213	20	1.9	20	94	0	67	31	5	10	52	1.58
658221--658272	20	2.7	20	90	3	79	38	21	11	28	1.88
665364--665410	20	2.4	20	82	10	53	4	12	2	80	0.94
665399--665442	18	2.4	18	100	0	88	15	6	9	68	1.38
668285--668343	20	2.9	20	82	2	73	32	15	11	40	1.83
672191--672309	51	2.3	50	84	8	161	31	26	10	31	1.90
672241--672388	79	1.9	79	88	0	224	29	25	13	31	1.94
672321--672439	51	2.3	51	88	2	168	27	28	14	29	1.95
672371--672599	79	2.9	78	79	5	262	26	22	15	35	1.94
672132--672516	130	3.0	130	83	6	476	29	24	12	33	1.92
676369--676518	52	2.9	52	90	4	232	31	17	17	34	1.93
677272--677781	43	9.8	52	72	16	203	35	15	23	24	1.94
677247--677444	108	1.8	107	80	5	238	35	14	24	25	1.93
677342--677565	122	1.8	123	83	2	299	37	14	23	25	1.92
677167--677596	230	1.9	231	84	4	591	36	15	24	23	1.93
677569--677799	43	5.1	44	82	10	295	31	17	24	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
677524--677794	43	5.8	48	79	12	285	32	18	23	26	1.97
677515--677799	92	3.1	92	91	3	437	32	17	24	25	1.96
677787--677921	32	4.3	31	91	3	209	14	18	37	29	1.91
677930--678411	35	14.7	30	83	10	198	31	12	34	20	1.90
677955--678489	66	8.0	65	85	9	593	31	12	34	21	1.90
677995--678491	168	3.0	168	89	3	743	30	12	35	21	1.91
677959--678489	134	3.9	135	86	8	710	31	12	34	21	1.91
678469--678619	31	4.9	31	78	9	155	26	17	31	24	1.97
679563--679599	16	2.3	16	95	0	65	2	0	10	86	0.67
679560--679601	22	2.0	21	90	4	66	2	0	11	85	0.68
679561--679601	6	7.2	6	81	10	50	2	0	12	85	0.70
679641--679683	17	2.6	17	81	3	52	0	9	9	81	0.88
686867--687016	52	2.9	52	88	4	214	31	16	17	35	1.92
687056--687122	33	2.0	33	88	0	98	40	13	11	34	1.81
687078--687102	13	1.9	13	100	0	50	32	16	16	36	1.90
691936--692064	52	2.5	52	97	0	240	27	17	19	36	1.94
691936--692084	52	2.9	51	91	2	217	28	17	18	34	1.94
692073--692184	33	3.4	33	72	15	122	33	12	16	37	1.87
692139--692163	13	1.9	13	100	0	50	36	16	16	32	1.90
692073--692218	67	2.2	66	98	1	283	32	13	16	38	1.87
692106--692217	33	3.4	33	72	20	124	30	14	16	39	1.88
692206--692303	19	5.8	18	69	28	81	37	17	11	33	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
692225--692281	13	3.9	13	74	24	51	35	17	12	35	1.87
692204--692301	32	3.0	32	95	1	169	36	17	11	34	1.85
693031--693418	92	4.2	89	85	8	467	31	18	25	25	1.97
693258--693326	22	3.2	22	62	25	56	30	17	26	26	1.97
693280--693347	21	3.2	21	62	25	52	27	17	27	26	1.98
693261--693331	24	3.2	24	61	19	62	28	19	25	26	1.99
693025--693423	49	8.5	49	87	6	519	31	17	25	24	1.97
693045--693437	135	2.9	135	85	6	522	31	17	25	24	1.97
693501--693633	49	2.9	44	82	11	178	29	18	27	24	1.98
693621--693877	29	8.6	29	81	8	221	19	17	33	28	1.95
693621--693753	64	2.1	64	87	8	195	15	18	36	29	1.92
693740--693869	29	4.4	29	92	1	224	22	16	30	30	1.96
693740--693869	59	2.2	58	94	1	224	22	16	30	30	1.96
695307--695365	9	6.1	10	80	11	61	3	0	13	83	0.78
695313--695344	15	2.1	15	100	0	64	0	0	12	87	0.54
695307--695362	23	2.3	23	84	6	67	3	0	12	83	0.76
705930--705980	24	2.1	24	100	0	102	23	19	3	52	1.62
707814--707942	52	2.5	52	97	0	240	27	17	19	36	1.94
707814--707962	52	2.9	51	92	2	217	28	17	18	34	1.94
707951--707975	13	1.9	13	100	0	50	36	16	16	32	1.90
708018--708114	19	5.7	18	72	27	88	36	17	12	34	1.87
708037--708093	13	3.9	13	76	24	60	33	17	14	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
708016--708113	32	3.0	32	96	1	178	35	17	12	34	1.87
711317--711371	19	2.9	19	97	0	101	34	10	14	40	1.81
711391--711453	33	1.9	33	86	0	90	26	12	17	42	1.85
713915--713987	27	2.7	27	87	6	94	23	34	21	20	1.97
713970--714140	51	3.3	51	79	4	198	29	26	11	32	1.92
714123--714204	28	2.9	28	82	7	96	24	31	17	26	1.97
722498--722587	1	90.0	1	75	0	81	87	6	1	4	0.70
722498--722585	31	2.9	29	85	11	122	87	6	1	4	0.71
722499--722585	40	2.2	39	87	6	122	87	6	1	4	0.71
722498--722602	11	9.1	11	78	20	74	85	5	4	3	0.82
723667--724099	55	7.5	60	80	9	453	26	26	19	27	1.99
724067--724329	86	3.0	87	80	4	284	17	25	12	43	1.85
724074--724348	44	6.4	43	71	14	196	18	26	14	40	1.89
727431--727649	79	2.8	77	77	9	212	29	27	11	31	1.91
727586--727705	51	2.4	51	84	2	161	31	25	10	32	1.90
727685--727756	28	2.6	28	86	8	94	27	26	16	29	1.97
727562--727891	158	2.1	158	81	6	375	28	26	12	32	1.93
727833--728015	79	2.3	79	82	1	233	28	24	13	33	1.93
739199--739319	52	2.3	52	97	0	224	28	18	18	34	1.94
739199--739339	52	2.7	51	90	4	212	30	17	18	33	1.94
739328--739352	13	1.9	13	100	0	50	36	16	16	32	1.90
739419--739443	13	1.9	13	100	0	50	32	16	16	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
739397--739463	33	2.0	33	88	0	98	40	13	11	34	1.81
744067--744094	13	2.2	13	100	0	56	39	17	14	28	1.89
744139--744209	32	2.2	32	92	0	124	35	15	12	36	1.86
744147--744207	19	3.5	19	66	25	62	34	14	13	37	1.85
750381--751142	28	27.1	28	77	7	634	28	28	18	24	1.98
751062--751167	31	3.5	33	77	11	102	26	29	20	23	1.99
752131--752255	20	5.8	20	68	20	81	29	14	12	43	1.83
752121--752302	50	3.8	50	75	17	206	28	15	12	42	1.84
752181--752255	20	3.8	19	78	7	87	32	12	13	42	1.80
753937--754107	52	3.3	52	77	10	163	28	26	12	31	1.93

Tables:   1   2   3   4   5   6   7   8   9   10