genome.fa.s62.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold62
Parameters: 2 7 7 80 10 50 1000
Length:  1452230

Tables:   1   2   3   4   5   6   7   

This is table  2  of  7  ( 839 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
538038--538224	27	6.2	27	74	16	113	34	13	31	19	1.91
537872--538936	95	11.1	94	76	14	787	36	12	30	19	1.90
537796--539208	128	11.0	127	77	13	1104	35	12	31	19	1.90
538266--538447	27	6.0	27	69	25	98	31	13	34	20	1.91
538483--538542	27	2.2	27	87	0	84	31	13	33	21	1.92
538810--539024	27	7.2	27	81	12	178	32	13	34	19	1.91
538510--539208	33	21.8	33	78	11	472	35	13	30	20	1.91
538965--539086	62	2.0	61	83	4	156	32	13	32	20	1.92
539026--539107	27	3.0	27	80	8	94	34	14	26	24	1.94
538904--539148	89	2.8	88	84	7	275	33	13	32	21	1.91
539101--539283	34	5.6	33	79	5	169	33	14	29	22	1.94
539147--539279	30	4.2	29	74	14	113	33	16	28	21	1.95
539931--539987	31	1.9	28	86	10	78	36	3	19	40	1.69
540239--540279	16	2.6	16	84	3	57	0	4	7	87	0.65
540527--540608	13	6.7	11	85	12	74	1	0	14	84	0.69
540527--540619	26	3.6	25	84	9	125	1	0	16	82	0.72
540540--540611	13	5.6	13	83	16	89	0	0	15	84	0.62
540538--540609	1	72.0	1	71	0	54	0	0	13	86	0.58
540527--540633	38	2.8	40	78	16	77	2	1	14	80	0.92
547601--547655	20	2.8	20	86	5	67	40	14	14	30	1.86
547669--547749	32	2.5	32	82	8	92	32	14	14	38	1.87
552400--552493	21	4.4	21	76	12	84	80	13	2	3	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
552411--552492	9	9.7	9	76	19	63	80	15	0	3	0.85
552416--552493	30	2.5	31	83	12	97	80	15	0	3	0.85
553930--554097	28	6.0	28	87	4	248	33	30	17	17	1.94
553932--554105	57	3.1	58	87	5	264	32	29	17	20	1.95
553930--554097	85	2.0	84	90	1	264	33	30	17	17	1.94
554082--554207	34	3.8	34	84	8	152	17	34	11	36	1.87
554102--554231	65	2.0	65	82	5	156	19	33	13	34	1.90
554380--554540	39	3.9	39	72	13	133	27	24	19	28	1.98
554331--554578	87	2.8	88	90	1	372	27	23	17	31	1.97
554501--555253	49	15.9	49	77	10	647	24	24	17	33	1.96
554501--555291	92	8.4	97	82	8	563	25	24	17	32	1.97
554321--555196	233	3.8	233	80	9	768	25	24	17	32	1.97
554829--555144	43	6.9	42	76	13	254	25	25	17	31	1.97
554829--555202	92	4.1	92	94	0	597	25	24	16	33	1.96
554501--555202	184	3.7	183	82	8	677	25	23	17	33	1.96
561775--561923	52	2.9	52	85	6	194	29	18	18	32	1.95
561989--562038	19	2.6	19	96	0	91	38	18	12	32	1.87
562027--562051	13	1.9	13	100	0	50	32	16	16	36	1.90
566183--566246	23	2.8	22	73	17	58	59	4	4	31	1.38
570084--570114	14	2.2	14	94	0	53	64	0	3	32	1.09
573142--573179	14	2.6	14	84	15	51	44	2	0	52	1.14
573916--574136	34	6.5	33	80	9	248	41	25	7	25	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
573919--574136	102	2.1	102	90	0	339	41	24	7	26	1.82
578544--578763	34	6.5	33	81	9	264	41	26	7	24	1.81
578546--578763	68	3.2	67	86	3	303	41	26	7	24	1.81
578544--578763	102	2.2	101	90	1	359	41	26	7	24	1.81
581310--581358	17	2.8	17	75	25	57	38	2	0	59	1.09
583789--583888	31	3.2	31	79	8	105	32	16	14	38	1.88
589902--589953	20	2.7	20	91	8	81	28	15	17	38	1.90
594570--594701	51	2.6	51	84	2	158	28	25	12	34	1.92
594793--594868	28	2.7	28	85	0	98	21	32	22	23	1.98
594697--594912	107	2.0	107	85	0	288	26	26	14	32	1.95
594982--595101	51	2.4	51	90	2	188	24	29	20	26	1.99
594821--595095	130	2.1	130	80	5	297	27	26	15	31	1.96
598885--599005	52	2.3	52	97	0	224	28	18	18	34	1.94
599059--599125	33	2.0	33	88	0	98	40	13	11	34	1.81
599081--599105	13	1.9	13	100	0	50	32	16	16	36	1.90
600004--600697	49	14.7	48	84	8	874	30	18	26	25	1.98
600004--600646	140	4.6	140	95	0	1099	30	18	25	25	1.98
600702--600794	33	2.8	33	93	6	163	15	19	36	29	1.92
600906--600960	27	2.0	27	96	0	101	25	14	38	21	1.92
600800--601829	34	31.9	33	78	13	586	32	13	33	21	1.92
600940--601828	34	27.6	33	78	14	613	31	13	33	21	1.92
600834--601461	100	6.3	97	80	11	399	32	13	33	20	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
600834--601801	62	15.1	62	81	12	645	32	13	33	21	1.92
601910--602051	62	2.3	63	85	7	182	31	16	28	22	1.96
601929--602053	31	4.0	31	81	12	141	27	18	29	24	1.98
602147--602176	8	3.6	8	91	8	51	26	0	23	50	1.50
610249--610369	52	2.3	52	97	0	224	28	18	18	34	1.94
610423--610489	33	2.0	33	88	0	98	40	13	11	34	1.81
610445--610469	13	1.9	13	100	0	50	32	16	16	36	1.90
613420--613539	52	2.4	50	85	4	161	27	12	14	45	1.80
613492--613571	32	2.5	32	83	0	97	25	15	12	47	1.80
614914--614956	18	2.3	19	96	4	79	44	0	11	44	1.40
616038--616078	11	3.7	11	83	9	57	2	29	0	68	1.03
616027--616078	22	2.5	20	84	12	68	3	28	0	67	1.08
616038--616079	12	3.8	12	78	18	54	2	28	0	69	1.01
616033--616089	22	2.6	22	88	5	80	1	24	0	73	0.92
616474--616913	166	2.6	165	77	7	399	47	9	12	30	1.74
617159--617195	11	3.4	11	96	0	65	64	0	2	32	1.07
617899--618187	83	3.5	82	78	5	305	42	13	25	17	1.86
617942--618076	40	3.3	40	69	10	119	48	15	21	14	1.81
619477--619502	13	2.0	13	100	0	52	38	15	15	30	1.88
623567--623597	15	2.1	15	93	0	53	48	16	22	12	1.80
625676--625714	13	3.0	13	100	0	78	30	15	15	38	1.88
627484--627524	19	2.2	19	100	0	82	56	4	14	24	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
628277--628302	13	2.0	13	100	0	52	38	15	15	30	1.88
632019--632150	48	2.8	48	82	0	165	37	17	25	18	1.93
632261--633181	32	30.5	32	83	7	731	20	18	30	30	1.96
632498--633166	96	7.2	95	84	6	806	19	17	31	31	1.95
633133--633188	28	2.1	27	90	6	87	28	16	25	30	1.96
633850--633891	10	4.2	10	81	0	57	23	9	19	47	1.78
634259--634318	21	2.8	22	77	10	70	8	10	10	71	1.31
638533--638557	13	1.9	13	100	0	50	36	16	16	32	1.90
638513--638579	33	2.0	33	88	0	98	32	11	14	40	1.83
638620--638644	13	1.9	13	100	0	50	32	16	16	36	1.90
638653--638833	52	3.5	52	97	0	335	34	18	17	28	1.94
642887--642913	10	2.7	10	100	0	54	0	0	22	77	0.76
645993--646065	20	3.6	20	81	3	101	35	13	19	31	1.91
646011--646086	21	3.7	21	78	3	91	40	11	17	30	1.85
645993--646086	41	2.3	41	96	0	170	38	12	18	30	1.88
646125--646150	13	2.0	13	100	0	52	38	15	15	30	1.88
652024--652101	20	3.7	20	74	15	75	26	15	15	42	1.87
652090--652153	13	4.9	13	94	0	110	34	18	15	31	1.93
652090--652153	26	2.5	26	100	0	128	34	18	15	31	1.93
654596--654668	20	3.6	20	81	3	101	35	13	19	31	1.91
654614--654689	21	3.7	21	78	3	91	40	11	17	30	1.85
654596--654689	41	2.3	41	96	0	170	38	12	18	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
654728--654753	13	2.0	13	100	0	52	38	15	15	30	1.88
662407--662495	1	89.0	1	72	0	61	85	10	2	2	0.77
662406--662495	43	2.2	42	84	11	123	84	11	2	2	0.80
662406--662495	21	4.3	20	81	14	96	84	11	2	2	0.80
663932--664072	27	5.0	27	79	8	138	29	33	18	18	1.95
663938--664381	30	15.0	30	76	9	353	29	30	16	22	1.96
663934--664376	57	7.5	57	79	9	415	29	30	16	22	1.96
664368--664545	52	3.5	52	76	15	194	25	26	15	33	1.95
664383--664472	43	2.1	43	91	0	144	26	25	17	30	1.98
665389--665446	20	3.0	20	82	2	64	27	10	15	46	1.78

Tables:   1   2   3   4   5   6   7