genome.fa.s62.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold62
Parameters: 2 7 7 80 10 50 1000
Length:  1452230

Tables:   1   2   3   4   5   6   7   

This is table  5  of  7  ( 839 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
927489--927544	19	2.9	19	75	2	58	35	10	21	32	1.88
929611--930372	156	4.9	154	71	11	434	39	18	14	27	1.89
929712--930385	309	2.2	310	77	7	672	40	17	14	26	1.89
931759--931789	16	1.9	16	93	0	53	38	9	9	41	1.71
934273--934390	51	2.3	52	85	1	157	30	14	11	43	1.81
934855--934908	20	2.7	20	88	0	81	42	12	14	29	1.83
936559--936589	9	3.4	9	95	0	53	38	0	35	25	1.56
941283--941323	22	2.0	21	86	13	59	31	21	4	41	1.74
942980--943032	21	2.5	21	100	0	106	33	0	41	24	1.55
943598--943651	20	2.7	20	82	0	72	44	12	12	29	1.80
943703--943727	13	1.9	13	100	0	50	32	16	16	36	1.90
943683--943750	33	2.1	32	86	2	91	36	17	13	32	1.89
947346--947411	28	2.4	28	81	0	78	25	24	21	28	1.99
947773--947828	13	4.5	12	76	10	51	33	16	19	30	1.94
949484--949552	32	2.2	32	97	0	129	28	26	10	34	1.89
949639--949682	22	2.0	22	95	0	79	29	22	11	36	1.89
950255--950592	170	2.0	169	95	0	613	24	22	18	34	1.96
951448--951489	21	2.0	21	85	0	57	42	4	28	23	1.74
951935--951994	21	2.9	21	79	20	72	53	1	25	20	1.55
953414--953438	13	1.9	13	100	0	50	36	16	16	32	1.90
955114--955170	10	5.5	10	77	8	60	26	29	7	36	1.83
955114--955169	22	2.7	20	81	10	67	26	30	7	35	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
955223--955266	22	2.0	22	90	0	70	29	20	11	38	1.87
959034--959081	25	1.9	25	87	8	71	29	25	12	33	1.92
960953--961005	21	2.5	21	84	0	70	26	15	16	41	1.88
961377--961412	15	2.6	14	91	8	56	86	0	13	0	0.58
962787--962827	20	2.0	20	86	9	57	21	17	9	51	1.74
963634--963912	79	3.6	78	82	5	357	31	13	25	29	1.94
963634--963914	157	1.8	154	85	1	339	32	13	25	29	1.93
966488--967241	61	12.4	60	83	7	848	28	19	26	25	1.99
966495--967246	242	3.1	240	84	5	921	28	19	26	25	1.98
967150--967332	98	1.9	99	83	5	246	34	17	23	24	1.96
967088--967395	159	1.9	160	82	5	383	33	19	24	23	1.97
967249--967551	123	2.5	120	85	2	390	32	20	23	24	1.98
967249--967589	61	5.6	61	82	5	386	32	19	23	23	1.98
967695--967733	15	2.5	16	83	8	53	33	7	30	28	1.85
969656--969711	19	2.9	19	86	2	76	30	23	12	33	1.92
969740--969806	33	2.0	33	85	5	91	35	8	17	37	1.82
975264--975392	52	2.5	52	93	0	222	29	17	17	34	1.94
975264--975413	52	2.9	51	88	4	212	30	17	18	34	1.94
975456--975480	13	1.9	13	100	0	50	32	16	16	36	1.90
982596--982639	22	2.0	22	95	0	79	27	11	31	29	1.91
983067--983909	49	17.8	49	75	10	646	31	17	25	25	1.97
983517--983668	39	3.7	39	73	17	144	24	19	30	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
983471--983905	87	4.9	87	85	5	523	29	17	26	26	1.97
983772--983839	21	3.2	20	66	25	50	30	16	27	25	1.96
983454--983909	92	5.1	91	86	4	581	30	16	26	26	1.97
983915--984023	32	3.2	33	77	11	105	39	11	32	16	1.85
983996--984222	27	7.8	27	74	15	184	31	13	33	22	1.93
983931--984199	27	8.8	31	75	12	177	34	13	31	20	1.91
984017--984195	91	1.9	94	89	4	283	32	12	32	21	1.91
983924--984166	118	2.0	119	85	5	330	34	12	32	20	1.90
984044--984255	61	3.4	61	78	8	205	34	12	32	20	1.91
988683--988740	24	2.4	25	82	2	73	1	3	18	75	1.03
996830--996881	20	2.5	20	76	14	52	34	21	1	42	1.64
999346--999398	20	2.7	20	90	0	79	33	13	18	33	1.90
1015710--1015740	15	2.1	15	93	0	53	48	16	22	12	1.80
1017810--1017848	13	3.0	13	96	0	69	30	17	15	35	1.91
1020385--1020410	13	2.0	13	100	0	52	38	15	15	30	1.88
1023808--1024304	28	17.5	29	79	5	457	30	26	16	26	1.97
1023836--1023913	30	2.6	30	86	8	106	34	26	11	26	1.91
1024217--1024364	28	5.0	30	77	12	87	31	28	16	24	1.96
1023808--1024364	56	9.7	58	76	10	246	30	26	16	26	1.97
1025367--1025480	51	2.3	50	92	3	185	27	16	12	43	1.83
1028926--1029087	71	2.3	71	81	2	182	23	14	24	37	1.92
1029117--1029514	207	1.9	208	83	7	511	27	14	25	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1029416--1029676	73	3.5	73	77	10	228	30	13	26	29	1.94
1031571--1032137	78	7.3	77	77	8	370	35	11	23	29	1.90
1031641--1031911	149	1.8	149	81	4	341	34	11	23	30	1.90
1034645--1034669	13	1.9	13	100	0	50	36	16	8	40	1.77
1035346--1035446	43	2.3	44	81	5	107	51	8	25	13	1.70
1035507--1035632	41	3.0	42	81	9	148	45	10	26	17	1.81
1035504--1035635	42	3.1	41	80	12	151	43	9	26	19	1.82
1035627--1036686	62	17.3	61	82	5	1090	32	20	23	24	1.98
1035640--1036686	122	8.6	121	82	5	1106	32	20	23	24	1.98
1042806--1043048	78	3.1	78	83	4	276	35	12	23	27	1.91
1042907--1043167	137	1.9	137	84	4	348	32	14	25	28	1.94
1043052--1043364	79	4.0	80	77	9	302	33	13	24	28	1.93
1043074--1043363	158	1.8	159	83	6	392	34	12	24	27	1.92
1045753--1045793	20	2.0	20	95	0	73	29	17	9	43	1.80
1054398--1054572	20	7.7	20	69	23	107	43	10	17	29	1.81
1092167--1092207	20	2.0	20	95	0	73	29	17	9	43	1.80
1100811--1100985	20	7.7	20	69	23	107	43	10	17	29	1.81
1105736--1105859	49	2.6	47	81	7	144	33	19	26	20	1.97
1105902--1106239	28	11.9	28	80	8	285	23	16	28	30	1.96
1105894--1106236	113	3.0	110	79	9	314	23	16	29	30	1.96
1107435--1107483	11	4.5	11	80	16	50	12	0	6	81	0.86
1121053--1121111	20	3.0	20	85	7	84	38	13	13	33	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1127580--1127904	105	3.1	105	80	5	406	37	12	21	28	1.89
1128414--1129093	373	1.8	372	82	4	868	40	16	14	28	1.88
1129398--1129530	50	2.6	51	83	3	162	28	20	12	39	1.88
1131866--1132267	79	5.1	78	75	9	300	27	25	12	34	1.93
1131847--1132270	157	2.7	157	82	4	496	27	24	12	34	1.92
1132205--1132328	63	2.0	64	86	1	178	25	24	13	36	1.92
1134348--1134401	21	2.6	21	100	0	108	44	11	18	25	1.83
1134431--1134482	19	2.7	20	87	6	79	42	15	13	28	1.85
1134915--1134981	37	1.9	35	88	11	102	32	11	25	29	1.92
1141560--1141614	19	2.8	20	88	2	85	30	20	14	34	1.92
1143506--1143530	13	1.9	13	100	0	50	32	16	16	36	1.90
1143516--1143568	20	2.6	21	82	11	65	35	15	16	32	1.90
1149785--1149815	13	2.4	13	94	0	53	41	16	9	32	1.80
1151526--1151671	48	3.0	48	94	2	258	38	8	21	31	1.83
1157170--1157561	61	6.4	60	82	8	386	26	27	17	28	1.98
1157170--1157507	120	2.8	118	84	8	400	25	27	17	28	1.98
1157319--1157579	66	4.2	64	81	10	202	26	27	16	29	1.96
1157545--1157804	43	6.1	42	82	6	267	21	26	12	39	1.89
1157545--1157788	126	1.9	126	80	6	280	22	25	13	38	1.90
1158461--1158596	51	2.7	51	80	6	134	28	18	10	42	1.83
1158538--1158586	20	2.2	22	75	20	57	30	14	10	44	1.78
1158547--1158586	20	2.0	20	95	0	71	27	15	12	45	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1160643--1160847	79	2.6	79	79	3	241	26	23	13	36	1.92
1160782--1160899	51	2.3	51	91	0	182	27	24	14	33	1.94
1160852--1161057	78	2.6	80	83	6	271	30	24	11	33	1.90
1160643--1161087	208	2.1	208	82	2	527	28	23	12	35	1.91
1164417--1164545	52	2.5	52	94	0	231	27	17	19	35	1.94
1164631--1164695	19	3.8	18	75	23	68	38	18	12	30	1.88
1164623--1164693	32	2.2	32	94	0	124	36	19	12	30	1.89
1164650--1164674	13	1.9	13	100	0	50	32	16	16	36	1.90
1167281--1167349	21	3.3	21	68	11	70	27	15	17	39	1.90
1167285--1167377	41	2.3	41	98	0	177	25	17	16	40	1.89

Tables:   1   2   3   4   5   6   7