genome.fa.s73.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold73
Parameters: 2 7 7 80 10 50 1000
Length:  1308442

Tables:   1   2   3   4   5   6   7   8   9   

This is table  5  of  9  ( 1034 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
590426--590515	26	3.5	26	73	17	66	37	2	0	60	1.09
590431--590477	17	2.7	18	80	12	53	34	2	0	63	1.06
590458--590501	17	2.6	17	79	13	54	43	0	0	56	0.99
590495--590543	25	2.0	25	83	0	62	51	0	0	48	1.00
590802--591016	34	6.4	34	85	4	256	26	7	24	40	1.83
590799--591016	102	2.1	101	88	1	319	27	7	24	40	1.82
595414--595629	34	6.4	34	84	1	256	26	7	24	40	1.82
595414--595629	102	2.1	101	88	2	317	26	7	24	40	1.82
596770--596800	13	2.5	13	94	5	55	80	0	0	19	0.71
597148--597190	12	3.8	12	78	9	54	30	2	0	67	1.03
597825--597884	27	2.2	27	100	0	120	20	25	13	41	1.88
601718--601757	20	2.0	20	85	0	53	72	0	0	27	0.85
602162--602196	18	1.9	18	88	0	52	40	2	0	57	1.14
602275--602324	20	2.7	19	88	11	77	72	0	0	28	0.86
602319--602364	22	2.2	22	84	7	60	45	2	4	47	1.34
604426--604521	34	2.9	32	83	9	95	48	0	0	51	1.00
604476--604521	17	2.7	17	77	12	58	45	0	0	54	0.99
604422--604522	16	6.7	16	69	19	58	48	0	0	51	1.00
604443--604521	32	2.4	33	85	4	97	49	0	0	50	1.00
605554--605663	55	2.0	55	92	0	184	38	2	14	44	1.60
606939--606985	23	2.1	22	84	7	60	44	2	2	51	1.25
608365--608410	21	2.2	21	88	0	65	26	23	0	50	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
608607--608679	15	4.8	15	72	20	62	34	0	19	46	1.50
613049--613089	15	2.7	15	88	0	64	26	53	7	12	1.64
613559--613755	36	5.3	36	71	11	173	31	5	22	40	1.77
613500--613785	75	3.8	75	95	0	509	31	6	21	39	1.80
614259--614325	9	7.9	8	78	18	73	68	0	0	31	0.90
614259--614327	17	4.0	17	78	15	79	68	0	0	31	0.90
614259--614327	26	2.6	27	80	13	90	68	0	0	31	0.90
614261--614319	19	3.3	19	83	6	70	69	0	0	30	0.89
614955--615038	5	16.4	5	72	14	55	42	0	1	55	1.07
614967--615046	41	2.0	40	82	7	99	45	0	1	53	1.08
615147--615197	21	2.4	21	80	6	59	49	3	7	39	1.51
618070--618107	11	3.1	12	82	17	51	31	0	0	68	0.90
619008--619037	15	2.0	15	100	0	60	60	0	0	40	0.97
619711--619751	16	2.4	16	88	8	55	34	2	0	63	1.08
621047--621092	15	3.0	15	83	3	56	39	0	4	56	1.19
621501--621549	25	2.0	25	87	0	71	53	4	20	22	1.63
621701--621758	2	29.0	2	89	0	89	44	5	0	50	1.24
622787--622824	13	2.6	16	84	16	55	52	0	0	47	1.00
622798--622849	16	3.4	16	82	12	56	59	0	1	38	1.08
623905--623948	3	14.7	3	100	0	88	68	0	0	31	0.90
625392--625426	12	2.9	12	91	0	52	40	0	8	51	1.33
626104--626143	21	2.0	20	90	5	62	42	0	0	57	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
626112--626156	21	2.0	23	87	8	67	48	0	0	51	1.00
627079--627113	2	17.5	2	100	0	70	51	0	0	48	1.00
629510--629552	17	2.6	16	82	10	50	37	2	2	58	1.24
629517--629552	17	2.1	17	89	0	54	36	2	0	61	1.11
631170--631245	29	2.6	28	77	4	71	42	2	2	52	1.29
640087--640115	12	2.4	12	100	0	58	86	0	0	13	0.58
640644--640700	26	2.2	25	82	14	71	56	0	0	43	0.99
640834--640897	35	1.9	32	84	15	85	32	0	1	65	1.02
640852--640926	29	2.6	30	77	10	84	40	1	0	58	1.06
640817--640892	17	4.3	18	73	6	59	30	0	1	68	0.98
642926--642957	2	16.0	2	100	0	64	50	0	50	0	1.00
648749--648788	2	20.0	2	100	0	80	50	0	0	50	1.00
649079--649131	24	2.2	24	86	6	72	32	1	1	64	1.15
649081--649131	12	4.5	11	80	9	50	31	1	1	64	1.15
654781--654819	3	12.7	3	94	5	69	66	0	0	33	0.92
654779--654827	22	2.3	22	82	10	66	67	0	2	30	1.02
656974--657013	21	2.0	20	90	5	62	42	0	0	57	0.98
656982--657026	21	2.0	23	87	8	67	48	0	0	51	1.00
657950--658002	2	26.5	2	100	0	106	50	0	0	49	1.00
660082--660116	10	3.5	10	88	0	52	8	91	0	0	0.42
660415--660457	17	2.6	16	82	10	50	37	2	2	58	1.24
660422--660457	17	2.1	17	89	0	54	36	2	0	61	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
670969--670997	12	2.4	12	100	0	58	86	0	0	13	0.58
671530--671586	26	2.2	25	82	14	71	56	0	0	43	0.99
671736--671817	29	2.8	29	76	12	87	40	1	0	58	1.06
671701--671777	17	4.4	18	73	6	61	31	0	1	67	0.99
673809--673838	2	15.0	2	100	0	60	50	0	50	0	1.00
678731--678796	32	2.1	32	97	0	123	31	3	16	48	1.62
678816--678856	3	14.0	3	94	5	75	31	0	0	68	0.90
679687--679711	2	12.5	2	100	0	50	48	0	0	52	1.00
679855--679904	24	2.1	24	100	0	100	44	16	16	24	1.86
680024--680074	11	4.5	11	80	9	50	31	3	1	62	1.24
684889--684920	14	2.3	14	100	0	64	62	0	0	37	0.95
685474--685544	20	3.5	20	77	9	72	59	0	0	40	0.98
686472--686517	17	2.9	17	78	15	53	45	0	0	54	0.99
689229--689273	21	2.1	21	92	8	74	55	0	31	13	1.38
690791--690826	19	1.9	18	88	5	54	36	8	2	52	1.46
690909--690960	22	2.3	21	76	20	52	28	1	1	67	1.12
690922--690962	11	3.6	12	81	18	52	31	0	2	65	1.05
690922--690968	22	2.1	22	84	7	60	31	2	2	63	1.18
691470--691511	19	2.4	19	88	11	63	61	0	0	38	0.96
693214--693267	19	2.7	19	77	5	54	31	3	0	64	1.11
693225--693267	10	4.2	10	79	5	50	34	4	0	60	1.17
693435--693524	28	3.4	27	80	8	87	25	7	21	45	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
698009--698098	28	3.4	27	80	8	87	25	7	21	45	1.78
699306--699357	23	2.2	24	89	3	79	48	0	0	51	1.00
702516--702546	16	1.9	16	93	0	53	9	6	0	83	0.79
702515--702550	17	2.1	17	89	0	54	8	8	0	83	0.82
708307--708361	18	3.4	18	67	27	50	49	0	0	50	1.00
709273--709340	36	1.9	35	82	14	86	55	0	0	44	0.99
709324--709354	16	2.0	16	93	6	55	48	0	0	51	1.00
709188--709543	177	2.0	178	85	6	482	46	3	5	44	1.43
709447--709540	35	3.0	30	69	23	77	48	0	1	50	1.07
717876--717987	59	1.9	58	92	1	188	32	16	9	41	1.82
718739--718777	10	3.8	10	83	6	51	79	0	0	20	0.73
719748--719806	20	3.1	20	80	9	79	64	0	0	35	0.94
719755--719831	28	2.7	27	73	15	75	59	0	0	40	0.97
719754--719819	19	3.5	20	76	17	70	63	0	0	36	0.95
720349--720381	16	1.9	17	88	11	50	57	0	3	39	1.14
720345--720392	13	3.4	13	74	20	51	56	0	2	41	1.11
720345--720406	30	2.1	30	85	11	83	61	0	3	35	1.12
721068--721121	27	2.0	26	82	13	65	50	0	0	50	1.00
721319--721366	14	3.3	15	77	16	57	37	0	0	62	0.95
721995--722029	3	11.7	3	90	0	52	68	2	25	2	1.17
722004--722032	15	1.9	15	100	0	58	68	6	20	3	1.27
722684--722710	2	13.5	2	100	0	54	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
724649--724711	24	2.6	24	76	16	76	50	1	1	46	1.20
724732--724773	20	2.1	20	82	8	50	45	4	2	47	1.36
725281--725310	11	2.8	11	95	5	53	23	0	0	76	0.78
726504--726537	16	2.1	16	89	10	52	32	2	0	64	1.08
727309--727370	34	2.0	32	84	15	85	51	0	1	46	1.10
727791--727846	26	2.1	25	83	9	67	55	0	1	42	1.10
729073--729110	2	20.0	2	89	10	62	50	0	0	50	1.00
730063--730100	3	13.0	3	94	5	69	68	0	0	31	0.90
730552--730584	14	2.4	14	90	10	50	27	9	0	63	1.24
731637--731821	34	5.6	34	70	10	141	45	22	3	28	1.69

Tables:   1   2   3   4   5   6   7   8   9