Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold73
Parameters: 2 7 7 80 10 50 1000
Length:  1308442

Tables:   1   2   3   4   5   6   7   8   9   

This is table  9  of  9  ( 1034 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1201274--1201311
20
1.9
20
94
0
67
44
2
13
39
1.57
1202521--1202582
25
2.4
26
76
15
67
66
1
0
32
1.02
1202803--1202848
3
16.0
3
84
8
51
60
0
2
36
1.09
1202803--1202848
20
2.3
20
84
0
56
60
0
2
36
1.09
1202814--1202859
20
2.3
20
85
7
58
54
4
2
39
1.32
1205356--1205393
18
2.1
18
100
0
76
21
10
39
28
1.86
1205927--1205956
14
2.1
14
93
0
51
50
0
16
33
1.46
1211510--1211562
21
2.3
23
81
18
67
45
3
0
50
1.19
1212028--1212068
3
14.3
3
90
10
68
65
0
0
34
0.93
1213689--1213741
19
2.7
20
80
16
65
39
0
0
60
0.97
1213688--1213741
20
2.7
19
75
18
56
38
0
0
61
0.96
1219136--1219176
12
3.2
12
93
6
64
87
2
9
0
0.62
1219135--1219170
18
2.0
18
94
0
63
91
0
8
0
0.41
1219912--1219965
21
2.5
21
75
19
58
59
0
3
37
1.15
1220378--1220411
17
2.0
17
88
0
50
52
23
5
17
1.66
1224388--1224420
2
16.5
2
100
0
66
51
0
0
48
1.00
1224886--1224964
27
3.0
24
77
17
77
56
1
0
41
1.07
1225340--1225381
17
2.5
17
76
3
50
50
0
0
50
1.00
1226149--1226207
17
3.5
17
72
19
52
18
3
3
74
1.10
1231964--1232146
34
5.4
34
88
0
260
25
7
26
39
1.83
1231964--1232146
102
1.8
101
92
1
312
25
7
26
39
1.83
1232453--1232515
19
3.3
19
93
0
99
28
19
19
33
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1236578--1236762
34
5.5
34
88
0
264
25
7
26
40
1.82
1236578--1236762
102
1.8
101
92
1
316
25
7
26
40
1.82
1237749--1237793
16
2.8
16
86
0
54
15
6
33
44
1.73
1237984--1238039
19
3.2
17
80
7
60
39
1
0
58
1.08
1237984--1238049
16
3.9
16
76
9
51
37
3
0
59
1.13
1238985--1239018
16
2.1
17
88
5
52
61
0
0
38
0.96
1238992--1239018
11
2.5
11
100
0
54
62
0
0
37
0.95
1238960--1239019
29
2.1
31
84
12
83
60
0
0
40
0.97
1239609--1239656
20
2.5
20
75
3
53
31
8
4
56
1.48
1240487--1240516
13
2.3
13
94
0
51
23
0
3
73
0.98
1241780--1241829
22
2.3
21
80
10
55
14
18
2
66
1.35
1243277--1243319
16
2.8
16
86
6
54
37
0
0
62
0.95
1246253--1246296
16
2.9
14
83
12
52
52
4
0
43
1.22
1251127--1251281
82
2.0
76
85
12
206
27
9
10
51
1.68
1251174--1251232
29
2.0
29
80
6
66
27
6
8
57
1.53
1251298--1251337
20
2.0
20
90
9
64
40
0
0
60
0.97
1254655--1254704
15
3.3
16
78
18
54
32
2
6
60
1.32
1257992--1258024
16
2.1
16
94
0
57
21
0
0
78
0.75
1257987--1258033
24
2.0
24
86
0
67
25
0
2
72
0.96
1264550--1264583
17
1.9
17
88
5
50
61
0
0
38
0.96
1264816--1264869
19
2.8
19
97
0
99
57
1
11
29
1.44
1265517--1265564
3
16.0
3
100
0
96
66
0
0
33
0.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1265964--1266497
275
1.9
275
81
2
642
30
13
15
40
1.85
1276363--1276395
7
4.9
7
88
7
50
39
3
0
57
1.14
1279121--1279190
24
2.8
24
72
14
61
45
22
8
22
1.79
1279123--1279219
27
3.7
27
78
4
92
45
23
8
22
1.79
1279207--1279264
26
2.3
25
88
5
82
27
15
24
32
1.95
1281857--1281911
22
2.7
21
76
20
62
43
0
0
56
0.99
1283531--1283609
27
3.0
27
73
16
74
53
2
0
44
1.14
1284331--1284387
17
3.3
18
70
20
50
19
5
3
71
1.19
1284556--1284596
22
2.0
21
86
13
59
34
0
4
60
1.18
1285507--1285559
26
2.0
25
82
13
63
24
1
7
66
1.28
1286029--1286077
21
2.3
20
76
10
53
18
6
4
71
1.23
1286420--1288024
95
16.7
95
83
4
1812
38
15
7
38
1.76
1286420--1288031
192
8.4
191
85
4
1813
38
15
7
38
1.76
1288514--1288548
2
17.5
2
100
0
70
48
0
0
51
1.00
1289468--1289498
14
2.3
14
94
5
55
29
9
0
61
1.28
1291699--1291734
12
3.2
12
84
15
58
33
0
0
66
0.92
1292437--1292608
93
1.8
94
80
6
206
36
11
13
38
1.80
1296101--1296150
26
2.0
26
88
7
77
16
2
4
78
1.00
1296882--1297427
95
5.7
92
78
9
535
39
11
6
42
1.65
1296889--1297442
191
2.9
188
85
5
740
39
11
6
42
1.66
1296884--1297427
286
1.9
284
82
5
675
39
11
5
43
1.65
1298851--1298908
14
4.3
13
76
6
62
31
6
1
60
1.33
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1298863--1298917
27
2.0
27
100
0
110
32
3
3
60
1.32
1299010--1299064
21
2.7
21
77
11
60
80
0
10
9
0.92
1305896--1306061
34
5.4
34
76
24
197
41
36
0
22
1.54
1305935--1305993
25
2.4
25
100
0
118
40
37
0
22
1.54
1305901--1306061
59
2.7
59
98
0
304
40
36
0
22
1.54
1305994--1306053
25
2.4
25
94
0
111
40
35
0
25
1.56
1307502--1307531
2
15.0
2
92
0
51
46
0
0
53
1.00
1307802--1307873
36
2.0
36
91
0
117
16
31
13
37
1.88

Tables:   1   2   3   4   5   6   7   8   9

The End!