genome.fa.s73.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold73
Parameters: 2 7 7 80 10 50 1000
Length:  1308442

Tables:   1   2   3   4   5   6   7   8   9   

This is table  8  of  9  ( 1034 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
936272--936332	21	2.7	23	72	12	63	31	1	6	60	1.32
936296--936350	21	2.7	21	76	21	62	34	0	3	61	1.13
936296--936353	20	2.8	21	78	17	68	32	0	5	62	1.18
936218--936400	70	2.6	70	78	7	196	37	1	6	54	1.35
936746--936788	20	2.2	20	88	12	63	44	0	20	34	1.52
936746--936788	19	2.2	19	88	12	61	44	0	20	34	1.52
937440--937496	28	2.0	29	86	3	80	52	0	3	43	1.18
938347--938385	2	19.5	2	94	0	69	46	0	0	53	1.00
942016--942062	18	2.6	18	93	0	76	29	17	6	46	1.72
943553--943597	2	22.5	2	100	0	90	0	48	0	51	1.00
945483--945539	16	3.2	17	75	18	53	42	0	0	57	0.98
945502--945548	21	2.3	20	82	13	60	46	2	0	51	1.13
945704--945790	8	9.9	8	69	26	52	37	1	0	60	1.04
945705--945795	9	9.3	10	76	19	68	37	1	0	61	1.03
945707--945792	18	4.6	19	83	2	95	37	1	0	61	1.04
945692--945787	47	2.0	48	83	15	121	38	2	0	59	1.09
945704--945792	19	4.8	19	83	8	112	38	1	0	60	1.04
946223--946254	2	16.5	2	93	6	57	50	0	0	50	1.00
949093--949171	17	4.8	16	76	14	63	53	0	0	46	1.00
949094--949157	33	1.9	32	81	12	76	51	0	0	48	1.00
949090--949171	23	3.5	22	72	25	60	52	0	0	47	1.00
950758--950820	20	3.1	20	72	9	56	42	0	1	55	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
950807--950840	15	2.1	17	89	10	54	55	0	0	44	0.99
953110--953153	21	2.1	21	82	0	52	38	6	18	36	1.77
954005--954051	16	3.0	16	75	3	51	61	4	2	31	1.27
954367--954391	13	1.9	13	100	0	50	0	8	0	92	0.40
955905--956056	20	8.1	20	65	21	62	42	0	0	57	0.98
955946--956070	31	3.6	35	77	18	111	40	0	0	58	1.04
955999--956061	23	2.8	23	83	11	69	39	0	0	60	0.97
956715--956843	5	27.2	5	72	17	55	63	0	0	35	1.00
956716--956902	13	14.5	13	66	22	65	62	0	1	36	1.07
956731--956791	30	2.1	29	87	3	86	73	0	0	26	0.83
956729--956907	27	6.8	26	69	20	88	62	0	1	36	1.07
956812--956935	56	2.3	51	80	15	126	56	2	0	40	1.18
956796--956935	27	5.2	25	75	17	104	55	2	1	40	1.20
963319--963357	3	12.0	3	86	10	51	30	2	2	64	1.21
963816--963858	23	1.9	22	81	13	52	58	2	2	37	1.24
963852--963935	30	3.1	25	85	15	89	63	3	0	33	1.12
965473--965498	2	13.0	2	100	0	52	50	0	0	50	1.00
965942--965983	19	2.2	20	86	4	59	30	0	0	69	0.89
966156--966226	11	6.7	10	76	13	63	66	0	2	30	1.06
966158--966263	27	4.0	25	75	21	85	62	0	1	34	1.13
966214--966283	26	2.6	25	84	13	79	55	1	0	42	1.08
966383--966462	29	2.6	30	82	11	92	56	5	0	38	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
966380--966434	29	1.9	29	92	3	94	58	5	0	36	1.21
966439--966504	9	6.9	10	70	16	50	59	1	0	39	1.07
966422--966504	18	4.4	18	70	19	55	57	2	0	39	1.12
968704--968734	16	1.9	16	93	0	53	38	0	3	58	1.15
969041--969090	25	1.9	27	84	8	68	52	0	2	46	1.12
970529--970608	16	4.7	17	76	17	78	57	2	0	40	1.12
970541--970626	32	2.7	33	84	10	101	56	1	0	41	1.06
970773--970799	2	13.5	2	100	0	54	51	0	0	48	1.00
971367--971400	10	3.4	10	91	0	50	61	0	0	38	0.96
972573--972606	2	17.0	2	100	0	68	50	0	0	50	1.00
972886--972938	24	2.2	24	96	0	97	26	41	16	15	1.88
974671--974739	17	3.6	18	72	27	54	55	0	0	44	0.99
974698--974747	22	2.2	22	75	10	57	54	0	0	46	1.00
975376--975420	14	3.4	14	78	12	58	42	0	0	57	0.98
975372--975420	20	2.5	20	86	0	71	42	0	0	57	0.99
975371--975420	26	1.9	26	91	0	82	42	0	0	58	0.98
976056--976080	13	1.9	13	100	0	50	40	0	0	60	0.97
977342--977449	37	2.9	39	71	20	106	50	0	0	50	1.00
978225--978276	10	5.1	10	75	13	52	55	1	3	38	1.29
978659--978687	3	9.7	3	100	0	58	31	0	0	68	0.89
979280--979308	3	9.7	3	100	0	58	68	0	0	31	0.89
979621--979651	15	2.1	15	100	0	62	48	6	12	32	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
979668--979720	2	26.5	2	100	0	106	49	0	0	50	1.00
980848--980917	19	3.7	18	81	12	70	28	1	0	70	0.96
980851--980915	29	2.3	28	86	7	87	26	1	0	72	0.94
980864--980915	10	5.3	10	77	13	54	23	1	0	75	0.91
980851--980918	28	2.4	27	83	13	84	26	1	0	72	0.94
982305--982438	69	1.9	69	90	3	216	16	52	4	26	1.62
982301--982438	75	1.9	69	82	11	170	15	52	4	27	1.62
984604--984639	17	2.3	15	90	9	54	52	0	0	47	1.00
989293--989389	21	4.5	22	71	20	62	47	0	0	52	1.00
989300--989362	14	4.4	14	71	15	56	53	0	0	46	1.00
989358--989393	17	2.1	17	90	10	56	36	0	0	63	0.94
989365--989405	16	2.5	17	84	7	50	43	0	0	56	0.99
990564--990623	11	5.5	11	77	11	52	65	0	0	35	0.93
990567--990619	11	4.7	11	79	9	54	62	0	0	37	0.96
990567--990623	23	2.6	23	72	10	57	64	0	0	35	0.93
992133--992183	21	2.4	21	77	6	59	43	0	1	54	1.11
992140--992189	24	2.1	24	82	17	61	40	0	4	56	1.18
992501--992550	12	4.2	12	75	14	50	40	0	0	60	0.97
992510--992572	24	2.6	24	80	11	76	36	0	1	61	1.05
992971--993003	15	2.1	17	88	11	52	54	0	0	45	0.99
994169--994213	23	1.9	24	86	4	65	37	2	2	57	1.23
994795--994833	19	2.0	20	90	5	62	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
994789--994839	22	2.3	23	90	10	79	49	0	0	50	1.00
994789--994846	22	2.5	22	83	10	64	46	1	1	50	1.22
999558--999592	14	2.4	14	90	4	52	60	0	0	40	0.97
999566--999592	14	1.9	14	100	0	54	59	0	0	40	0.98
1002466--1002525	32	2.0	29	87	9	84	41	0	0	58	0.98
1003490--1003555	30	2.2	30	83	0	78	46	7	0	45	1.31
1004239--1004269	2	15.5	2	100	0	62	48	0	0	51	1.00
1004768--1004800	2	16.5	2	93	0	57	48	0	0	51	1.00
1009498--1009528	2	15.5	2	100	0	62	51	48	0	0	1.00
1011184--1011239	17	2.8	19	73	24	53	55	0	0	44	0.99
1011728--1011772	17	2.7	16	82	6	54	33	4	2	60	1.29
1012286--1012364	30	2.7	29	84	6	79	53	0	0	46	1.00
1012274--1012368	31	3.1	31	74	8	97	49	0	1	49	1.07
1013413--1013459	18	2.8	17	84	9	60	63	0	2	34	1.06
1014394--1014441	19	2.6	19	81	12	55	66	0	0	33	0.92
1014405--1014449	19	2.2	21	80	7	58	60	0	0	40	0.97
1019594--1019634	20	2.2	18	86	8	55	56	0	0	43	0.99
1019963--1020024	21	3.2	18	70	14	52	45	0	0	54	0.99
1021226--1021295	16	4.5	16	70	10	56	40	0	5	54	1.24
1023353--1023385	4	8.2	4	100	0	66	75	0	0	24	0.80
1023766--1023899	44	3.0	44	95	0	232	38	7	14	38	1.75
1026089--1026186	19	5.1	19	67	18	60	45	1	1	52	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1026092--1026182	20	4.7	19	67	14	60	42	1	1	54	1.14
1030906--1030930	7	3.6	7	100	0	50	88	0	0	12	0.53
1031353--1031377	2	12.5	2	100	0	50	52	0	48	0	1.00
1031646--1031698	6	8.1	7	75	12	51	30	0	1	67	1.01
1031643--1031682	16	2.5	16	88	8	55	32	0	0	67	0.91
1031663--1031698	13	2.8	13	86	0	54	33	0	2	63	1.08
1194863--1194910	2	24.5	2	95	4	89	52	0	47	0	1.00
1195907--1195936	2	15.0	2	100	0	60	50	0	0	50	1.00
1196631--1196659	2	14.5	2	100	0	58	48	0	0	51	1.00
1197792--1197834	22	2.0	22	90	0	68	46	0	0	53	1.00

Tables:   1   2   3   4   5   6   7   8   9