genome.fa.s8.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold8
Parameters: 2 7 7 80 10 50 1000
Length:  6381039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   

This is table  7  of  33  ( 3942 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
884364--884396	3	11.0	3	93	0	57	63	0	33	3	1.10
886158--886259	55	1.9	53	83	13	131	58	0	0	40	1.04
886456--886488	17	2.0	16	94	5	57	60	0	3	36	1.12
886523--886567	19	2.4	18	85	7	54	53	8	0	37	1.32
886577--886616	14	3.0	14	79	20	50	67	0	0	32	0.91
886604--886642	20	1.9	20	89	5	60	48	0	2	48	1.15
886894--886938	19	2.4	18	85	7	54	53	8	0	37	1.32
886250--887171	371	2.5	371	95	1	1634	40	14	8	35	1.77
886948--886987	14	3.0	14	79	20	50	67	0	0	32	0.91
887521--887595	32	2.4	32	82	8	91	41	0	2	56	1.13
887880--887962	31	2.8	30	76	8	80	43	0	0	56	0.99
888453--888495	18	2.3	19	76	8	52	37	0	0	62	0.95
888906--888974	22	3.2	21	71	17	54	49	0	0	50	1.00
888935--888981	16	2.9	16	77	20	53	51	0	0	48	1.00
888987--889053	11	6.0	11	75	16	57	31	1	1	65	1.10
888991--889052	22	2.7	24	76	19	69	30	1	1	66	1.11
888990--889055	34	1.9	35	87	9	100	31	1	1	65	1.11
889900--889963	13	4.9	13	75	12	60	64	0	0	35	0.94
891222--891280	25	2.4	25	83	8	75	35	0	1	62	1.05
892290--892321	2	16.0	2	100	0	64	50	0	0	50	1.00
894924--894963	21	1.9	21	84	0	53	70	2	0	27	1.01
895459--895484	2	13.0	2	100	0	52	0	50	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
901496--901520	9	2.8	9	100	0	50	92	0	8	0	0.40
902324--902358	2	17.5	2	100	0	70	48	0	0	51	1.00
906176--906228	3	17.7	3	84	0	61	35	1	60	1	1.19
908147--908172	1	26.0	1	100	0	52	100	0	0	0	0.00
910464--910514	26	2.0	26	84	7	68	56	7	1	33	1.39
916412--916524	48	2.4	48	78	10	115	42	0	2	54	1.14
916475--916574	27	3.7	27	76	9	80	41	0	0	59	0.98
916493--916576	37	2.3	37	83	8	100	38	0	0	61	0.96
916524--916576	11	5.0	11	79	9	56	33	0	0	66	0.92
916514--916565	15	3.5	16	77	12	58	34	0	0	65	0.93
916526--916583	26	2.2	26	88	11	84	36	0	0	63	0.94
917260--917307	23	2.2	23	85	7	64	54	0	0	45	0.99
917242--917307	31	2.1	31	81	10	73	51	0	1	46	1.10
917570--917621	15	3.4	15	75	12	52	48	5	0	46	1.26
917600--917659	25	2.5	23	76	10	75	40	5	3	51	1.40
917821--917863	19	2.3	19	84	8	52	53	0	2	44	1.13
919195--919241	2	24.0	2	86	4	69	51	4	0	44	1.21
922672--922726	28	2.0	28	85	0	74	36	7	20	36	1.80
923646--923998	193	1.8	193	79	4	417	31	15	16	36	1.90
925832--926049	34	6.5	34	85	5	282	40	27	7	24	1.82
925830--926049	67	3.3	67	88	1	323	40	27	7	24	1.82
930115--930177	19	3.3	19	90	0	90	34	19	17	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
930483--930698	34	6.4	34	85	5	278	40	27	7	24	1.83
930481--930698	67	3.2	67	88	1	319	40	27	7	24	1.82
931883--931928	19	2.3	20	82	17	60	34	4	19	41	1.71
933149--933245	47	2.1	47	100	0	194	28	10	15	45	1.79
934993--935298	166	1.8	166	87	0	450	31	14	20	33	1.93
937262--937409	74	2.0	73	93	1	251	42	17	17	22	1.89
938351--938402	20	2.5	20	87	3	77	32	15	11	40	1.83
940305--940354	25	2.0	25	100	0	100	24	20	36	20	1.95
942590--942634	18	2.2	21	81	18	60	40	4	0	55	1.20
944332--944419	44	2.0	44	100	0	176	36	6	15	40	1.74
944594--944660	22	3.0	22	75	14	66	41	5	4	47	1.48
946044--946181	48	2.9	48	96	0	249	32	5	20	41	1.76
948782--948884	51	2.0	51	94	0	179	37	13	13	34	1.84
950161--950315	77	2.0	77	94	2	276	21	24	7	45	1.78
950490--950534	22	2.0	22	100	0	90	55	8	4	31	1.51
950512--950663	77	2.0	77	94	2	270	42	14	12	30	1.83
953141--953175	13	2.7	13	90	0	52	82	2	2	11	0.88
953105--953198	8	11.1	8	75	18	50	77	3	2	17	0.99
953156--953198	4	11.5	4	85	14	65	79	0	0	20	0.74
953320--953347	6	4.7	6	100	0	56	50	35	0	14	1.43
954143--954254	39	2.8	39	72	6	100	38	14	10	36	1.81
954642--954671	2	15.0	2	92	0	51	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
954743--954787	23	2.0	23	83	12	58	51	0	2	46	1.13
957012--957163	76	2.0	76	100	0	304	27	21	22	28	1.99
959266--959298	16	2.0	17	94	5	59	48	0	0	51	1.00
959270--959373	53	2.0	53	96	0	190	43	9	3	43	1.55
959481--959585	52	2.0	52	96	0	192	35	23	20	20	1.96
960607--960634	14	2.0	14	100	0	56	14	14	0	71	1.15
960631--960681	6	9.2	6	79	16	56	31	1	15	50	1.55
960626--960679	27	2.0	27	96	0	99	31	3	12	51	1.57
962813--962915	51	2.0	51	94	0	179	37	13	13	34	1.84
964191--964345	77	2.0	77	94	2	276	21	24	7	45	1.78
964520--964564	22	2.0	22	100	0	90	55	8	4	31	1.51
964542--964693	77	2.0	77	94	2	270	42	14	12	30	1.83
965807--965831	2	12.5	2	100	0	50	52	0	0	48	1.00
967178--967212	13	2.7	13	90	0	52	82	2	2	11	0.88
967142--967235	8	11.1	8	75	18	50	77	3	2	17	0.99
967193--967235	4	11.5	4	85	14	65	79	0	0	20	0.74
967495--967519	2	12.5	2	100	0	50	48	0	0	52	1.00
970588--970646	22	2.7	23	77	12	61	44	3	3	49	1.36
970604--970646	23	1.9	23	90	4	70	41	4	2	51	1.35
970600--970660	22	2.7	23	80	10	63	42	3	6	47	1.45
971753--971864	39	2.8	39	72	6	100	38	14	10	36	1.81
972351--972395	23	2.0	23	83	12	58	51	0	2	46	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
976800--976832	16	2.0	17	94	5	59	48	0	0	51	1.00
976804--976907	53	2.0	53	96	0	190	43	9	3	43	1.55
977015--977119	52	2.0	52	96	0	192	35	23	20	20	1.96
978139--978166	14	2.0	14	100	0	56	14	14	0	71	1.15
978163--978213	6	9.2	6	79	16	56	31	1	15	50	1.55
978158--978211	27	2.0	27	96	0	99	31	3	12	51	1.57
980429--980531	51	2.0	51	94	0	179	37	13	13	34	1.84
981804--981958	77	2.0	77	94	2	276	21	24	7	45	1.78
982133--982177	22	2.0	22	100	0	90	55	8	4	31	1.51
982155--982306	77	2.0	77	94	2	270	42	14	12	30	1.83
984794--984828	13	2.7	13	90	0	52	82	2	2	11	0.88
984758--984851	8	11.1	8	75	18	50	77	3	2	17	0.99
984809--984851	4	11.5	4	85	14	65	79	0	0	20	0.74
985112--985136	2	12.5	2	100	0	50	48	0	0	52	1.00
988205--988263	22	2.7	23	77	12	61	44	3	3	49	1.36
988221--988263	23	1.9	23	90	4	70	41	4	2	51	1.35
988217--988277	22	2.7	23	80	10	63	42	3	6	47	1.45
989370--989481	39	2.8	39	72	6	100	38	14	10	36	1.81
989969--990013	23	2.0	23	83	12	58	51	0	2	46	1.13
994418--994450	16	2.0	17	94	5	59	48	0	0	51	1.00
994422--994525	53	2.0	53	96	0	190	43	9	3	43	1.55
994633--994737	52	2.0	52	96	0	192	35	23	20	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
995758--995785	14	2.0	14	100	0	56	14	14	0	71	1.15
995782--995832	6	9.2	6	79	16	56	31	1	15	50	1.55
995777--995830	27	2.0	27	96	0	99	31	3	12	51	1.57
998045--998147	51	2.0	51	94	0	179	37	13	13	34	1.84
999414--999568	77	2.0	77	94	2	276	21	24	7	45	1.78
999743--999787	22	2.0	22	100	0	90	55	8	4	31	1.51
999765--999916	77	2.0	77	94	2	270	42	14	12	30	1.83
1002397--1002431	13	2.7	13	90	0	52	82	2	2	11	0.88
1002361--1002454	8	11.1	8	75	18	50	77	3	2	17	0.99
1002412--1002454	4	11.5	4	85	14	65	79	0	0	20	0.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33