genome.fa.s290.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168115.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_36, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  443530

Tables:   1   2   3   4   5   

This is table  2  of  5  ( 542 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108036--108352	158	2.0	158	85	6	428	38	11	8	40	1.73
108224--108569	181	1.9	181	84	1	460	41	9	9	39	1.70
108424--108719	149	2.0	149	84	6	395	43	7	7	41	1.60
108194--110021	511	3.6	496	74	11	1315	41	9	8	40	1.69
108573--109038	181	2.6	179	80	5	483	41	9	8	40	1.69
107911--108895	330	3.0	326	79	6	1005	42	9	8	39	1.69
109072--114506	181	30.4	174	71	13	1908	41	10	8	40	1.68
109072--111447	364	6.6	361	77	7	1910	41	10	7	40	1.68
111730--114497	537	5.1	534	74	9	1602	41	10	8	40	1.68
113362--113670	167	1.8	168	82	2	397	42	9	4	43	1.58
118920--118945	3	8.7	3	100	0	52	69	0	30	0	0.89
122172--122666	180	2.8	176	81	4	492	40	7	10	41	1.68
123257--123394	16	8.9	15	69	25	60	50	1	0	47	1.15
123260--123347	32	2.6	34	81	13	112	51	0	1	47	1.08
123288--123336	13	3.2	15	80	19	57	51	0	0	48	1.00
123914--123975	28	2.3	26	77	22	67	46	3	1	48	1.28
123915--123976	26	2.3	29	81	13	80	48	3	1	46	1.28
123924--123982	26	2.1	29	81	9	70	47	3	3	45	1.36
124442--124570	22	6.1	22	69	19	87	55	0	0	44	0.99
124448--124510	17	3.5	17	75	18	56	52	0	0	47	1.00
124451--124509	25	2.4	25	85	5	75	50	0	0	49	1.00
124458--124564	17	6.2	17	67	21	55	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
124597--124637	17	2.4	16	88	8	55	41	4	2	51	1.36
124699--124770	29	2.6	27	84	8	83	44	1	2	51	1.24
124854--124921	7	9.3	7	72	25	52	47	0	0	52	1.00
124854--124921	24	3.1	21	80	19	77	47	0	0	52	1.00
125087--125130	18	2.3	20	77	18	58	47	2	0	50	1.13
125116--125164	13	3.7	13	76	15	55	48	0	2	48	1.12
125761--125848	32	2.7	33	79	10	101	46	2	1	50	1.21
126352--126403	18	2.9	18	77	11	63	53	1	0	44	1.11
126378--126442	24	2.9	22	72	18	55	47	4	0	47	1.22
126378--126491	43	2.6	43	79	14	108	49	2	0	47	1.21
126501--126589	39	2.3	39	78	21	98	43	1	0	55	1.07
126627--126670	19	2.3	19	84	0	61	50	2	0	47	1.13
127255--127311	20	2.9	21	76	10	57	45	3	3	47	1.37
127398--127451	21	2.5	22	80	14	60	51	1	1	44	1.22
127627--128556	181	5.2	172	74	11	570	40	10	8	40	1.69
127707--128556	362	2.4	362	79	4	849	41	9	7	40	1.67
128956--129441	180	2.7	178	80	5	460	41	9	8	40	1.67
129860--129947	22	3.9	23	69	24	62	54	1	1	43	1.15
130633--130668	12	3.0	13	80	19	51	36	0	0	63	0.94
130596--130673	11	7.0	12	72	15	69	46	0	0	53	1.00
130632--130683	22	2.3	23	80	3	61	44	0	1	53	1.11
130815--130875	32	1.9	32	83	6	79	47	3	3	45	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
131953--132058	27	3.9	29	72	21	86	50	0	0	48	1.13
131963--132010	18	2.8	18	78	9	55	50	0	2	47	1.12
131969--132032	29	2.2	31	81	16	82	50	0	1	48	1.10
131985--132031	15	3.3	13	81	18	58	46	0	0	53	1.00
131999--132046	25	1.9	25	91	0	78	47	0	0	52	1.00
131977--132061	18	4.9	17	69	18	59	50	0	0	49	1.00
132047--132091	17	2.6	18	77	19	51	53	4	0	42	1.21
132157--132214	15	4.0	15	72	17	59	56	0	0	43	0.99
132167--132223	19	3.1	19	77	7	55	52	0	0	47	1.00
132202--132236	18	1.9	18	88	0	52	45	0	0	54	0.99
132206--132241	15	2.3	16	90	4	56	47	0	0	52	1.00
132341--132382	15	2.9	14	86	13	50	45	2	2	50	1.27
132671--132705	10	3.4	10	84	7	52	40	0	2	57	1.14
132508--132707	29	7.1	27	67	23	87	47	2	2	48	1.26
133276--133329	5	10.8	5	91	0	90	35	0	0	64	0.94
133276--133338	15	4.1	15	95	2	108	36	0	0	63	0.95
134245--134289	20	2.2	20	88	8	63	48	0	2	48	1.13
134264--134343	27	3.0	26	78	8	81	48	0	1	50	1.08
134262--134344	9	9.2	9	69	18	57	49	0	1	49	1.08
134673--134726	23	2.5	22	77	16	58	44	1	0	53	1.11
134665--134716	27	1.9	26	88	11	70	48	1	0	50	1.12
134787--134854	18	3.7	18	71	15	59	48	1	0	50	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
134810--134964	20	7.4	22	66	26	88	43	1	0	54	1.08
134856--134936	13	6.1	13	72	22	53	41	0	0	58	0.98
134781--134935	37	4.0	39	76	15	139	45	0	0	54	1.04
134806--134935	42	3.3	40	76	19	123	44	0	0	54	1.05
134909--134959	25	2.1	24	85	7	68	43	1	0	54	1.11
135006--135592	181	3.3	180	77	8	495	41	9	8	41	1.67
135303--135770	176	2.6	180	78	8	406	41	10	7	40	1.68
135548--135882	176	1.9	177	81	5	410	40	11	8	39	1.71
135983--136030	23	2.1	23	88	3	71	58	0	0	41	0.98
135980--136030	12	4.2	12	82	7	59	58	0	0	41	0.98
136421--136465	11	3.4	14	77	22	53	51	0	0	48	1.00
137323--137373	9	5.6	9	79	9	50	50	1	0	47	1.12
137320--137373	27	2.0	27	85	7	74	50	1	0	48	1.11
137316--137369	18	3.2	18	77	15	53	50	1	0	48	1.11
137387--137431	22	2.0	23	91	4	74	51	0	0	48	1.00
137393--137437	22	2.0	22	87	8	65	48	2	0	48	1.13
138645--138677	6	5.3	6	92	7	57	48	0	0	51	1.00
138645--138677	13	2.7	12	90	9	57	48	0	0	51	1.00
138984--139042	23	2.6	23	72	0	64	52	5	0	42	1.23
139121--139169	14	3.5	15	89	8	61	51	0	0	48	1.00
139124--139169	13	3.4	14	88	8	60	50	0	0	50	1.00
139617--140046	180	2.4	177	78	8	447	40	7	9	42	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
140493--140549	24	2.3	24	80	19	73	42	5	0	52	1.24
141220--141652	176	2.4	179	80	6	459	42	8	9	40	1.67
141352--141682	181	1.8	180	84	3	450	40	7	10	41	1.68
141334--141759	181	2.4	180	78	3	414	39	7	9	43	1.66
141852--141894	21	2.0	23	86	9	63	55	4	2	37	1.33
142131--143291	181	6.5	178	76	7	955	40	7	10	42	1.67
142131--143291	361	3.2	354	78	7	1094	40	7	10	42	1.67
143331--143947	182	3.4	181	77	8	603	38	7	9	44	1.66
143324--144100	361	2.1	361	78	6	793	39	8	9	42	1.67
144946--146181	181	6.9	179	76	7	962	41	11	7	39	1.70
144946--146181	362	3.4	353	77	7	1130	41	11	7	39	1.70
147102--150529	181	19.4	177	72	11	1377	41	9	8	40	1.68
147691--148970	179	7.2	180	75	8	919	41	10	8	40	1.69
147694--150326	360	7.5	355	74	10	1776	41	9	8	40	1.68
155581--155618	19	2.0	19	100	0	76	26	15	26	31	1.96
158247--158279	17	2.0	17	88	5	50	45	0	18	36	1.49
158729--160350	181	9.0	180	79	4	1433	40	10	9	40	1.71
160700--160789	16	5.5	15	76	23	85	52	4	1	42	1.29
160715--160804	14	5.7	14	67	23	54	51	5	0	43	1.25
160716--160800	17	5.1	17	78	16	106	50	5	0	43	1.26
160685--160800	33	3.5	33	95	3	198	50	5	0	43	1.30
160729--160786	19	3.3	19	68	22	63	51	5	0	43	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
160713--160798	16	5.2	16	78	15	104	51	5	0	43	1.26
160902--160942	13	3.2	13	86	6	57	48	0	2	48	1.14
160911--160954	19	2.3	20	84	11	65	47	2	0	50	1.13
160946--160988	11	3.7	11	80	19	52	37	0	6	55	1.27
160991--163955	180	16.5	178	72	11	1616	40	9	8	40	1.69
161022--163951	532	5.4	521	72	14	1484	40	9	8	40	1.68
162626--163951	181	7.4	181	76	8	1067	41	9	8	41	1.67
163830--164055	123	1.8	122	87	2	337	40	7	9	42	1.66
163649--164238	303	1.9	304	81	3	697	41	8	8	40	1.67
163953--164666	180	4.0	183	78	5	630	41	9	7	41	1.65

Tables:   1   2   3   4   5