genome.fa.s290.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168115.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_36, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  443530

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 542 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
381112--381776	326	2.0	326	80	7	740	42	9	8	40	1.67
381427--387198	355	16.2	361	72	10	1951	42	10	8	39	1.68
383015--383468	172	2.6	171	77	9	433	41	10	7	40	1.67
382736--384033	705	1.8	703	78	7	1435	42	9	8	39	1.68
384862--389116	181	23.9	177	72	9	807	41	10	8	39	1.69
385753--386761	536	1.9	538	79	4	1140	43	10	7	39	1.67
381502--389210	717	10.8	711	74	9	3383	41	10	8	39	1.69
387199--389210	181	11.2	180	77	6	1617	40	10	8	40	1.70
387255--397786	362	28.8	354	67	15	2078	40	10	8	40	1.69
388962--389497	295	1.8	297	79	5	636	44	10	7	37	1.67
389871--389919	17	2.8	18	75	15	57	38	10	8	42	1.68
389261--397815	181	47.1	181	71	11	3667	41	10	8	40	1.69
389225--398958	720	13.5	714	72	11	4919	41	10	8	40	1.69
391534--391578	23	2.0	23	95	0	81	31	17	11	40	1.85
393321--393353	18	1.9	17	88	11	50	39	6	6	48	1.53
393784--393953	87	2.0	87	90	2	270	46	7	7	38	1.60
389225--398958	362	26.9	359	71	12	4407	41	10	8	40	1.69
395464--397137	886	1.9	881	80	5	1993	41	9	8	40	1.68
397843--398958	182	6.2	181	76	7	958	43	10	8	37	1.70
399704--399741	20	2.0	19	85	10	51	13	18	26	42	1.87
401289--401323	16	2.2	16	89	0	52	40	11	14	34	1.82
406077--408199	181	11.7	180	75	7	1467	42	9	8	39	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
406923--407297	187	2.0	188	86	2	522	42	8	9	39	1.67
407797--407835	18	2.3	17	86	8	53	38	15	5	41	1.69
408231--415943	181	43.0	181	74	8	5085	40	8	9	41	1.68
409535--409567	18	1.9	17	88	11	50	48	6	6	39	1.53
410319--410633	169	1.9	171	84	4	431	42	5	9	42	1.60
415942--418697	181	15.3	180	76	7	2095	41	9	8	40	1.69
419147--423907	180	26.6	180	76	7	3445	42	10	7	39	1.68
418723--431273	361	35.2	353	70	13	3696	41	9	8	40	1.68
423594--424210	317	1.9	316	81	6	732	42	9	6	40	1.64
423908--425826	182	10.8	173	72	13	789	42	10	7	39	1.67
423124--424759	852	1.9	852	79	7	1827	42	9	8	39	1.67
424952--424985	16	2.1	17	89	10	54	32	14	5	47	1.69
424617--425513	354	2.6	350	79	7	774	42	10	8	38	1.69
424804--425644	354	2.4	348	80	7	917	42	10	7	39	1.67
424834--425832	354	2.8	353	78	9	853	42	10	7	40	1.67
425852--431292	180	30.3	179	72	10	2011	41	9	8	40	1.67
425173--426478	683	1.9	675	80	7	1487	41	9	7	41	1.66
425852--435860	361	27.8	358	70	12	3808	41	9	8	40	1.68
425851--435860	181	55.5	181	71	11	4338	41	9	8	40	1.68
428380--428511	69	2.0	66	83	7	167	47	9	1	40	1.46
432009--432332	179	1.8	178	80	9	390	44	10	6	38	1.65
432748--435860	363	8.7	359	76	9	2373	41	10	8	40	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
435896--437819	361	5.3	357	76	10	1385	40	8	10	41	1.68
435896--437845	180	10.7	181	75	9	1362	40	8	10	41	1.68
436718--436764	23	2.0	23	95	0	85	44	6	17	31	1.73
436538--436943	205	2.0	203	81	6	482	39	8	11	40	1.71
436196--437261	565	1.9	563	81	6	1316	39	7	11	41	1.69
436741--437845	182	6.1	178	75	7	824	40	8	9	41	1.68
437845--438928	181	6.1	180	75	7	889	38	8	11	42	1.71
437845--438929	361	3.1	353	76	8	949	38	8	11	42	1.71
438991--443425	361	12.5	356	72	11	1593	40	8	10	41	1.69
438990--440437	181	8.1	181	77	7	632	39	8	9	41	1.69
439836--439868	18	1.9	17	88	11	50	48	12	6	33	1.65
439193--440437	540	2.3	534	80	6	1342	40	8	9	41	1.69
439071--440680	355	4.5	355	77	7	1208	39	8	10	41	1.70
439006--440685	181	9.4	176	74	9	600	39	8	10	41	1.70
440694--441275	180	3.3	174	77	9	457	41	7	9	40	1.67
441144--441431	157	1.8	157	86	3	418	41	8	9	40	1.68
441300--443448	181	12.0	178	74	7	1472	40	7	10	41	1.69
441300--443448	361	6.0	355	75	7	1639	40	7	10	41	1.69

Tables:   1   2   3   4   5

The End!