genome.fa.s290.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168115.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_36, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  443530

Tables:   1   2   3   4   5   

This is table  4  of  5  ( 542 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
273542--274167	59	10.7	58	87	6	863	44	7	13	34	1.70
273540--274167	118	5.4	118	93	3	995	45	7	13	34	1.70
273542--274167	58	10.7	57	87	5	894	44	7	13	34	1.70
274716--288878	181	78.5	180	72	10	2482	41	9	8	39	1.69
275296--275618	166	1.9	166	82	4	402	41	11	6	39	1.68
274690--291263	895	18.4	886	72	11	2854	41	9	8	39	1.69
277474--277509	16	2.1	17	90	10	56	38	11	5	44	1.63
278537--278569	18	1.9	17	88	11	50	39	6	6	48	1.53
275462--288878	362	37.2	362	73	9	7792	41	9	8	39	1.69
280531--280651	63	1.9	63	84	3	163	33	12	7	46	1.70
280594--288878	181	46.0	180	75	7	5502	41	9	8	40	1.69
280596--288878	363	23.0	359	74	9	5131	41	9	8	40	1.69
281481--283134	357	4.6	358	75	7	870	40	10	8	40	1.69
284707--284741	17	2.1	17	89	5	54	40	14	2	42	1.60
285781--285818	18	2.2	17	86	9	51	42	7	2	47	1.46
286159--287840	915	1.8	912	80	6	1984	41	9	9	40	1.69
288741--289010	147	1.8	147	85	5	384	44	8	9	38	1.66
288563--289209	325	2.0	325	79	8	710	42	8	8	40	1.66
288925--291361	179	13.7	178	74	7	1404	41	10	8	39	1.70
288889--291274	537	4.5	534	80	6	2143	41	10	8	39	1.70
288903--291355	357	6.9	352	74	9	1569	41	10	8	39	1.70
288925--291261	717	3.3	700	77	8	1713	41	10	8	39	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
291362--293840	181	13.7	179	76	6	1856	41	10	8	39	1.68
291362--293840	361	6.9	360	76	7	1840	41	10	8	39	1.68
294138--294181	22	2.0	22	100	0	88	50	9	9	31	1.65
295550--295581	15	2.2	15	94	5	57	43	6	12	37	1.68
295840--296570	181	4.1	179	80	5	742	40	10	8	40	1.71
296758--296788	14	2.2	14	94	0	53	70	3	0	25	1.02
297757--297806	20	2.5	19	81	18	57	78	12	6	4	1.08
300852--304359	358	9.7	355	75	8	2096	40	8	9	41	1.68
301076--304357	539	6.1	536	76	6	2334	40	8	9	42	1.68
300974--304370	181	18.9	180	75	6	2219	39	8	9	42	1.68
305428--305565	69	2.1	65	87	5	195	35	10	6	47	1.63
305509--310134	180	25.8	180	74	8	3213	41	9	8	40	1.68
308322--308364	19	2.4	18	85	11	54	37	20	2	39	1.66
309974--310248	145	1.9	146	85	5	387	43	10	6	39	1.66
309860--310452	326	1.8	325	79	7	700	42	9	7	39	1.67
310287--310656	177	2.1	179	81	5	428	40	9	7	41	1.67
311138--312797	180	9.3	178	73	8	1025	42	10	8	38	1.69
311395--312249	182	4.7	182	75	6	619	43	10	8	38	1.70
312869--312935	35	1.9	35	84	0	89	31	10	10	47	1.71
313064--314246	180	6.6	179	78	5	1120	42	9	8	39	1.67
313064--314538	181	8.3	180	76	8	1143	42	9	8	39	1.67
314225--314258	17	2.1	17	88	5	52	41	8	5	44	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
316269--322678	181	35.9	179	75	9	4014	41	9	8	40	1.68
318282--318316	15	2.3	15	90	0	52	60	2	5	31	1.35
316453--322195	903	6.4	890	73	11	2821	41	9	8	40	1.68
319411--319443	18	1.9	17	88	11	50	39	6	6	48	1.53
316413--322678	537	11.7	534	74	10	3286	41	9	8	40	1.68
323191--323497	160	1.9	162	85	2	422	43	9	8	38	1.68
323352--324110	181	4.2	178	77	5	663	42	10	8	39	1.68
324610--325100	180	2.8	173	79	9	462	42	8	7	41	1.65
324585--325359	181	4.3	174	74	10	507	41	9	7	41	1.66
325335--325505	87	2.0	87	89	0	261	45	6	7	40	1.58
325630--325965	172	1.9	175	81	8	400	38	10	8	42	1.69
325624--327717	180	11.7	179	75	9	1386	41	10	8	40	1.69
325928--327609	533	3.1	531	76	10	1354	41	10	8	39	1.69
325422--327708	361	6.4	358	74	10	1501	41	10	8	40	1.69
327868--328195	166	2.0	166	81	4	394	37	8	9	45	1.66
328030--329300	180	7.1	180	78	6	1011	40	9	8	41	1.68
329299--330634	182	7.4	181	74	8	972	42	10	8	37	1.71
332185--332217	18	1.9	17	88	11	50	39	6	6	48	1.53
330668--332700	181	11.3	179	75	7	1377	41	9	8	41	1.68
332554--332586	17	2.0	17	88	5	50	39	12	0	48	1.40
333806--333850	21	2.1	21	87	4	63	62	6	8	22	1.48
333864--334646	181	4.4	177	76	9	541	43	9	8	38	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
335271--342417	181	40.0	175	72	11	2586	41	9	8	39	1.68
336054--336376	169	1.9	170	84	5	431	41	7	8	42	1.64
336219--341205	181	27.7	180	74	9	3239	41	9	8	39	1.69
335865--336512	349	1.9	348	80	5	781	42	7	8	41	1.64
335271--343444	362	22.7	360	72	11	3971	42	9	8	39	1.68
337368--337883	178	2.9	179	80	6	379	44	9	7	38	1.65
338461--338773	170	1.8	170	82	2	405	39	8	8	42	1.66
334661--343444	715	12.2	704	72	11	3514	42	9	8	39	1.68
338695--340324	896	1.8	894	80	5	1948	42	10	8	38	1.70
339962--339994	16	1.9	18	88	11	52	30	6	9	54	1.56
341576--342431	182	4.7	187	74	9	502	41	9	8	39	1.70
341240--342431	180	6.6	180	74	7	749	42	9	8	39	1.69
342404--342498	47	2.0	47	97	0	181	46	6	14	32	1.70
342698--343386	360	1.9	361	80	4	791	42	11	6	39	1.67
342698--343386	181	3.8	180	79	6	560	42	11	6	39	1.67
343449--346620	181	17.6	181	76	5	2268	40	7	9	41	1.67
343472--346606	544	5.8	537	75	8	2156	40	7	10	41	1.67
343449--346620	363	8.8	358	75	7	2250	40	7	9	41	1.67
346620--348230	182	9.0	179	76	6	1028	41	8	8	41	1.66
347150--347812	357	1.8	358	79	6	777	41	8	8	40	1.67
350623--350670	21	2.3	20	79	13	53	45	0	14	39	1.45
355994--359973	180	22.2	181	75	6	3008	39	8	10	41	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
357793--357825	18	1.9	17	88	11	50	48	3	6	42	1.43
355994--368952	535	24.1	529	69	14	2782	40	8	9	41	1.68
359969--361932	181	10.9	179	75	7	1350	40	8	9	41	1.68
356046--368939	718	18.0	711	72	12	2549	40	8	9	41	1.68
362037--363094	181	5.9	178	77	7	903	41	8	8	41	1.66
362108--363044	356	2.6	354	80	6	989	41	7	8	42	1.64
362978--363194	111	2.0	110	83	2	274	39	7	5	46	1.57
363245--363754	181	2.8	180	77	3	454	40	8	10	41	1.69
363606--363921	168	1.9	169	81	5	390	40	7	10	41	1.68
363418--364055	349	1.8	349	80	5	779	40	8	9	41	1.68
363238--369021	543	10.8	528	74	10	2271	40	8	9	41	1.68
363768--368071	181	24.0	181	76	7	3364	40	8	9	42	1.67
363245--368102	362	13.5	359	75	7	3501	40	8	9	41	1.68
368087--369021	181	5.2	179	77	7	840	40	8	9	41	1.67
368990--369034	23	2.0	22	83	16	56	48	4	6	40	1.49
369345--369578	118	2.0	118	79	11	257	45	8	6	38	1.62
369462--370288	180	4.6	180	75	10	511	43	9	8	37	1.69
372059--372097	20	2.0	20	84	0	51	43	2	0	53	1.14
372931--377140	181	23.0	179	68	13	1106	42	10	8	39	1.68
373812--373842	16	1.9	16	100	0	62	54	6	0	38	1.26
374535--374572	20	1.9	20	84	10	51	31	10	7	50	1.66
375775--375810	16	2.1	17	90	10	56	41	5	8	44	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
375400--381445	363	16.6	362	73	9	3518	41	10	8	39	1.69
375393--381445	543	11.1	544	71	11	2196	41	10	8	39	1.69
376511--376544	17	2.1	17	88	5	52	35	11	0	52	1.38
377447--377766	171	1.9	172	80	3	376	40	12	6	40	1.68
377389--393866	361	45.2	363	69	13	4725	41	10	8	39	1.69
377389--381445	181	22.4	180	73	8	2441	41	9	8	40	1.69
378702--378755	17	3.1	18	81	10	58	42	7	7	42	1.61
377389--381412	362	11.1	361	76	7	2944	41	9	8	40	1.68
380379--381412	358	2.9	351	81	7	1065	42	9	8	40	1.67
381439--387187	181	32.3	181	74	8	3478	42	10	8	39	1.68

Tables:   1   2   3   4   5