genome.fa.s346.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168171.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_41, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  255648

Tables:   1   2   3   4   5   6   

This is table  1  of  6  ( 672 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
324--353	12	2.4	12	94	5	51	43	0	0	56	0.99
507--567	30	2.0	31	87	9	90	60	0	0	39	0.97
998--1039	14	2.8	15	82	10	50	45	4	0	50	1.23
1072--1110	19	1.9	19	85	10	51	58	0	0	41	0.98
1134--1166	16	1.9	18	88	11	52	51	3	3	42	1.32
1456--1510	10	5.4	10	72	20	51	47	0	1	50	1.11
1866--1981	35	3.4	33	76	18	112	50	1	2	44	1.25
3699--3767	30	2.3	28	77	18	68	50	1	1	46	1.19
3729--3762	17	2.0	17	88	0	50	55	2	0	41	1.15
3794--3836	20	2.3	19	81	18	54	44	0	2	53	1.13
4550--4593	21	2.0	21	86	4	61	54	0	0	45	0.99
5123--5202	22	3.5	22	70	23	58	47	2	3	46	1.34
5443--5491	19	2.7	18	79	14	57	48	2	4	44	1.33
6018--6050	17	1.9	17	88	11	50	39	6	3	51	1.42
6364--6404	19	2.3	19	87	8	59	39	7	0	53	1.29
6359--6404	19	2.5	17	82	10	56	36	6	0	56	1.25
6773--6806	13	2.5	14	85	9	52	29	2	2	64	1.22
7252--7309	27	2.1	29	82	17	72	44	1	1	51	1.21
7372--7420	25	2.0	23	84	11	62	46	0	0	53	1.00
7718--8429	182	3.9	181	77	7	651	42	9	8	40	1.67
7942--8398	178	2.5	177	79	5	429	43	8	8	39	1.65
8501--8585	24	3.7	23	72	17	61	44	2	1	51	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8739--8768	15	2.0	15	93	0	51	50	0	0	50	1.00
9337--9375	18	2.2	18	85	0	51	53	0	2	43	1.14
9691--9733	21	2.2	20	84	16	54	39	2	2	55	1.25
9762--9871	14	7.3	15	71	20	56	45	0	2	50	1.22
9817--9849	13	2.5	13	85	14	50	42	0	6	51	1.26
9834--9871	18	2.1	18	90	0	58	44	0	2	52	1.14
9813--9898	40	2.2	40	83	8	104	44	1	4	50	1.30
9924--9975	13	4.2	12	77	18	54	53	3	1	40	1.30
9968--10099	6	22.2	6	66	22	57	45	0	3	50	1.19
9970--10054	36	2.4	35	77	15	84	44	0	4	50	1.22
11535--11878	174	1.9	179	79	8	391	40	7	9	43	1.64
11939--11970	15	2.1	16	94	5	57	50	0	0	50	1.00
12287--12339	17	3.2	17	78	5	54	49	1	1	47	1.23
12469--12542	32	2.3	32	86	2	96	48	0	1	50	1.09
13356--13835	181	2.7	175	77	6	468	42	8	7	41	1.64
13959--14005	13	3.8	12	80	8	58	44	2	0	53	1.12
14080--14170	44	2.2	40	84	7	110	47	3	4	45	1.39
14161--14209	11	4.6	11	73	19	50	53	0	0	46	1.00
16353--16384	16	1.9	17	93	6	57	46	3	6	43	1.44
16317--16375	23	2.5	24	76	15	61	45	0	1	52	1.10
16396--16430	16	2.3	15	90	5	52	37	5	2	54	1.39
16405--16467	27	2.3	27	83	5	74	44	3	3	49	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16751--16809	21	2.8	21	75	14	59	44	5	1	49	1.34
17246--17301	27	2.1	27	86	6	78	44	1	0	53	1.11
17414--17501	17	5.2	17	75	15	60	43	2	2	52	1.26
17758--17792	18	1.9	19	88	11	56	65	0	0	34	0.93
18681--18774	31	3.1	28	77	17	82	46	1	3	48	1.25
18922--18946	10	2.5	10	100	0	50	60	0	8	32	1.26
19377--19446	23	3.3	22	82	9	74	45	0	2	51	1.16
19348--19450	19	5.5	19	69	24	67	45	0	1	51	1.19
19561--20165	181	3.3	181	77	4	522	42	8	8	40	1.66
20644--21106	181	2.6	177	77	8	452	42	9	8	39	1.68
21733--21781	18	2.7	19	69	12	50	53	0	2	44	1.12
23295--23379	43	2.1	39	82	8	98	22	15	22	40	1.91
23992--24025	12	2.8	12	86	4	50	67	0	32	0	0.91
25528--25595	36	1.9	34	82	11	84	45	1	4	48	1.31
25791--25871	13	5.6	14	71	22	53	50	0	3	45	1.19
25905--26045	15	9.3	15	67	20	55	46	3	1	48	1.28
26177--26244	34	1.9	36	85	11	97	52	1	1	44	1.19
27462--27531	25	2.7	25	82	10	70	48	2	2	45	1.32
27515--27553	20	1.9	20	89	5	60	48	2	0	48	1.15
27807--27920	6	16.4	7	72	20	64	23	2	1	71	1.07
27812--27897	29	2.7	29	83	16	93	24	2	2	70	1.10
28300--28335	19	1.9	19	88	5	56	22	5	22	50	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28718--28766	18	2.7	18	79	14	57	16	2	4	77	1.01
37216--37475	83	3.2	81	78	11	219	23	14	18	42	1.88
37216--37535	41	7.9	40	73	13	192	23	15	20	40	1.90
37362--37546	81	2.3	80	79	6	187	23	15	21	39	1.91
37799--37823	6	4.2	6	100	0	50	16	0	0	84	0.63
37813--37938	33	3.7	32	74	19	80	25	5	1	67	1.21
37874--37975	16	6.4	16	72	18	88	22	6	0	69	1.18
37876--37938	30	2.0	32	87	12	94	23	7	0	68	1.16
38227--38269	21	2.0	22	90	4	70	20	2	9	67	1.30
38708--38755	9	5.4	9	78	14	55	18	2	2	77	0.97
38701--38753	14	3.4	17	69	26	53	16	3	1	77	1.01
39866--39914	21	2.3	22	82	3	55	40	2	6	51	1.38
39995--40087	25	3.6	25	77	16	84	43	1	1	54	1.14
40024--40067	21	2.1	21	91	8	72	40	0	0	59	0.98
40012--40074	17	3.9	17	69	12	51	39	1	0	58	1.07
40432--40466	16	2.1	18	89	10	56	45	0	5	48	1.26
41084--41153	31	2.3	30	85	11	90	50	0	0	50	1.00
41089--41143	12	4.5	13	74	17	55	52	0	0	47	1.00
41631--41695	14	4.5	14	74	22	55	52	0	0	47	1.00
41737--41767	15	2.0	16	93	6	55	38	0	0	61	0.96
42324--42354	15	2.0	16	93	6	55	61	0	0	38	0.96
42769--42836	26	2.7	24	75	6	64	48	0	5	45	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42866--42914	22	2.3	21	82	3	62	48	2	0	48	1.12
42979--43021	22	2.0	22	86	9	61	39	0	6	53	1.28
43184--43241	12	4.6	12	74	19	55	53	1	1	43	1.21
43155--43243	39	2.4	35	85	12	108	53	1	1	43	1.15
43184--43240	27	2.1	27	83	6	71	52	1	1	43	1.21
43490--43525	16	2.2	16	95	0	63	44	0	0	55	0.99
43508--43554	12	3.9	12	80	5	51	44	2	0	53	1.12
43640--43682	22	2.0	21	82	13	52	48	0	2	48	1.14
43680--43712	15	2.2	15	89	10	50	30	3	0	66	1.06
43816--43854	4	9.8	4	83	10	53	48	0	0	51	1.00
45037--45088	11	5.2	10	88	11	72	48	0	0	51	1.00
45037--45088	18	2.7	18	88	11	68	48	0	0	51	1.00
45766--45806	17	2.4	17	83	4	55	46	0	0	53	1.00
45897--45943	12	3.5	13	77	11	51	53	0	0	46	1.00
45901--45974	21	3.8	20	69	26	61	52	0	1	45	1.09
46201--46260	29	2.0	31	83	6	79	53	5	1	40	1.33
46384--46411	10	2.8	10	100	0	56	50	7	0	42	1.30
46349--46516	54	3.0	52	74	20	137	50	1	1	47	1.19
46959--46999	20	2.2	18	91	8	64	43	2	0	53	1.13
46967--47052	20	4.3	19	77	20	61	45	1	1	52	1.16
47014--47052	17	2.3	17	86	8	53	51	0	0	48	1.00
47201--47241	18	2.2	19	86	4	57	46	4	0	48	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47472--47519	24	2.0	24	84	11	64	54	6	0	39	1.26
47812--47861	23	2.2	23	82	7	57	50	2	0	48	1.12
48347--48395	18	2.7	19	78	12	59	42	0	0	57	0.99
48712--48784	25	2.9	25	78	15	80	53	0	0	46	1.00
48991--49056	3	21.7	3	75	9	62	37	0	1	60	1.06
49073--49125	14	3.9	14	80	14	58	54	1	0	43	1.11
49161--49219	20	2.9	19	76	16	64	45	0	1	52	1.10
49174--49217	22	2.0	22	86	8	63	47	0	2	50	1.13
49466--49513	23	2.0	24	88	11	73	50	0	0	50	1.00
49692--49744	19	2.8	18	83	13	63	66	1	0	32	1.03

Tables:   1   2   3   4   5   6