genome.fa.s346.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168171.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_41, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  255648

Tables:   1   2   3   4   5   6   

This is table  3  of  6  ( 672 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94526--94613	30	2.8	31	79	8	99	53	0	2	44	1.13
94544--94639	33	2.9	32	79	13	113	58	1	1	39	1.12
94601--94639	12	3.2	12	85	3	51	64	2	0	33	1.08
95252--95336	33	2.6	34	83	10	99	45	0	2	51	1.13
95267--95336	22	3.2	22	75	16	65	42	0	2	54	1.15
95651--95707	15	3.7	15	73	19	55	49	0	1	49	1.11
95651--95707	22	2.5	22	75	13	62	49	0	1	49	1.11
96718--96789	4	18.5	4	72	16	62	47	1	1	50	1.18
96700--96792	14	7.5	13	71	20	74	44	1	2	52	1.20
96717--96797	22	3.3	24	81	10	94	45	1	1	51	1.16
96895--96928	16	2.2	16	89	5	52	35	2	5	55	1.39
97051--97105	23	2.5	22	83	13	69	49	0	1	49	1.11
97326--97360	14	2.5	13	86	13	52	65	0	0	34	0.93
97567--97617	20	2.5	21	78	12	61	50	0	0	49	1.00
97861--97922	24	2.6	24	80	14	65	46	0	6	46	1.28
98157--98222	29	2.4	28	85	9	93	39	0	3	57	1.14
98386--98492	50	2.2	49	81	11	121	51	1	2	43	1.27
98571--98605	17	2.1	17	89	10	54	42	2	0	54	1.15
98731--98798	25	2.8	24	72	16	59	45	0	2	51	1.16
99701--99759	30	2.0	30	83	6	75	44	5	1	49	1.34
99883--99948	22	3.0	21	77	16	64	54	0	0	45	0.99
99907--99944	14	2.9	13	81	11	51	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99884--99963	20	3.9	20	75	10	63	52	0	1	46	1.08
100434--100485	26	2.0	25	85	10	70	48	0	0	51	1.00
100866--100919	20	2.4	23	82	17	69	46	0	1	51	1.11
100963--101000	17	2.2	17	95	0	67	50	0	2	47	1.15
101247--101317	30	2.3	30	83	13	76	47	1	5	45	1.35
101749--101788	21	2.0	20	85	14	55	47	2	0	50	1.14
101749--101813	13	5.6	12	77	14	57	43	3	0	53	1.16
102003--102047	22	2.0	22	82	0	54	57	0	0	42	0.98
102034--102090	21	2.6	22	77	5	71	50	0	1	47	1.11
102011--102108	32	3.2	28	74	20	79	52	1	1	45	1.14
102130--102165	18	2.0	18	89	10	56	41	2	0	55	1.14
102885--102982	46	2.2	45	80	10	110	44	0	3	52	1.16
103113--103172	30	2.1	29	82	11	72	56	0	5	38	1.21
103138--103201	19	3.6	18	75	12	51	51	1	1	45	1.20
103400--103476	13	6.1	13	72	11	52	50	0	1	48	1.09
103416--103468	17	2.8	20	77	16	67	50	0	1	47	1.12
103399--103484	20	4.4	20	72	11	72	51	0	2	46	1.13
103588--103642	21	2.8	19	77	20	60	47	1	3	47	1.30
103694--103748	17	3.4	17	76	16	62	47	3	1	47	1.30
103740--103794	21	2.6	21	88	2	74	47	1	5	45	1.36
103944--104002	29	2.0	30	86	6	84	49	0	3	47	1.18
104084--104118	18	1.9	18	88	0	52	42	2	2	51	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104461--104505	21	2.1	21	84	15	58	44	2	0	53	1.13
104600--104638	20	2.0	20	85	10	53	51	0	0	48	1.00
104702--104739	20	2.0	18	90	10	58	47	5	2	44	1.39
104726--104815	23	3.8	24	75	15	80	47	2	0	50	1.13
105144--105176	18	1.9	17	88	11	50	39	12	6	42	1.67
104835--105376	181	3.0	180	77	6	531	38	10	9	40	1.74
105465--105821	181	2.0	182	84	2	468	42	10	8	38	1.70
105835--105885	25	2.2	23	80	16	61	47	0	3	49	1.20
106490--106537	20	2.4	20	96	0	87	52	10	6	31	1.60
107994--108069	25	3.0	25	75	15	75	47	2	1	48	1.24
108281--108319	19	2.1	18	90	4	60	43	0	0	56	0.99
109726--109765	19	2.1	19	86	9	55	52	5	5	37	1.45
109758--109806	18	2.7	18	82	17	57	34	4	2	59	1.28
109759--109824	23	3.0	22	79	16	66	34	3	3	59	1.28
110000--110042	15	2.8	16	82	7	52	44	0	2	53	1.13
110743--110969	121	1.9	119	81	5	269	51	8	12	27	1.68
111448--111803	21	16.0	22	75	11	248	40	9	14	35	1.79
111475--111638	46	3.6	46	76	14	176	42	9	15	33	1.78
111445--111617	91	1.9	92	89	1	267	43	10	13	31	1.78
111475--111796	67	4.8	67	80	8	327	40	9	14	34	1.79
111677--111803	22	5.9	22	85	3	152	34	9	17	38	1.82
113931--113955	9	2.8	9	100	0	50	44	8	0	48	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
114494--114557	22	3.0	20	76	14	58	48	0	1	50	1.10
114829--114870	15	2.9	14	77	22	50	52	0	2	45	1.13
114893--114926	16	2.0	16	88	11	50	55	0	0	44	0.99
114961--114994	15	2.2	16	89	5	52	50	0	0	50	1.00
115200--115267	34	1.9	36	82	11	88	52	2	1	42	1.25
115213--115267	18	3.2	17	73	19	51	50	3	0	45	1.19
116388--116439	25	2.1	25	86	10	72	55	0	3	40	1.18
116678--116713	16	2.2	16	90	0	54	44	0	2	52	1.15
116782--116834	19	2.8	19	82	2	54	41	1	1	54	1.22
116803--116844	10	4.3	10	79	14	52	42	0	0	57	0.99
116803--116871	25	2.5	28	84	15	83	42	0	0	57	0.98
117284--117331	15	3.0	16	79	14	55	45	2	0	52	1.12
117747--117805	31	2.0	29	81	18	70	44	1	3	50	1.28
120301--120454	10	16.2	9	65	25	52	50	3	1	44	1.29
120567--120607	19	2.2	19	86	0	55	48	4	0	46	1.23
120859--120901	21	2.0	24	82	17	58	46	0	4	48	1.22
121052--121574	180	2.9	179	79	6	536	41	11	7	39	1.70
122199--122732	178	3.0	175	79	8	486	39	7	10	41	1.68
123005--123052	18	2.5	19	78	18	55	52	2	4	41	1.32
123148--123188	19	2.2	19	86	0	55	46	0	4	48	1.23
123193--123244	16	3.4	15	72	12	52	32	1	0	65	1.04
123218--123259	20	2.1	20	86	0	57	28	2	0	69	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
123344--123405	24	2.3	26	78	18	65	54	1	1	41	1.19
123766--123811	22	2.1	22	84	8	58	45	2	4	47	1.34
123766--123813	23	2.1	22	81	11	53	45	2	4	47	1.33
123814--123881	26	2.7	24	75	6	64	48	0	5	45	1.26
124008--124050	22	2.0	22	86	9	61	39	0	6	53	1.28
124133--124157	11	2.3	11	100	0	50	52	8	0	40	1.31
124501--124545	16	2.9	16	90	3	65	44	0	0	55	0.99
124512--124565	25	2.2	25	83	12	67	46	0	0	53	1.00
124510--124568	23	2.4	24	78	13	59	44	0	0	55	0.99
124712--124742	13	2.3	14	94	5	55	67	3	0	29	1.06
125426--125468	20	2.4	17	88	11	59	60	0	0	39	0.97
126921--126950	11	2.6	11	94	5	51	46	10	0	43	1.37
127030--127460	182	2.3	186	80	5	502	41	9	8	40	1.68
128149--128201	19	2.8	19	76	21	58	52	0	1	45	1.11
128160--128241	30	2.7	31	75	15	84	50	0	3	46	1.19
128275--128393	48	2.5	48	78	13	129	42	0	0	56	1.11
128523--128596	9	8.8	8	71	14	51	41	1	4	52	1.28
128523--128596	17	4.4	17	81	13	82	41	1	4	52	1.28
128523--128612	34	2.7	34	81	11	89	42	2	4	51	1.34
128898--128942	13	3.3	13	79	11	54	57	2	2	37	1.23
129354--129388	14	2.5	15	90	9	56	51	0	0	48	1.00
129687--129721	13	2.8	12	87	8	52	48	8	0	42	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
131209--131580	181	2.1	180	83	4	473	39	10	8	41	1.71
132279--132332	27	2.0	27	85	7	74	48	1	1	48	1.23
132309--132355	20	2.4	19	82	7	58	57	0	0	42	0.98
132314--132356	19	2.3	19	80	8	52	58	0	0	41	0.98
132578--132611	13	2.6	14	90	9	54	41	0	2	55	1.15
132681--132736	17	3.5	17	74	20	57	39	1	0	58	1.08
133539--133595	29	2.0	28	83	12	73	36	7	1	54	1.38
134094--134129	13	2.7	13	91	4	54	50	0	0	50	1.00
135202--135243	22	2.0	21	85	4	57	47	0	0	52	1.00
135187--135242	26	2.1	28	86	6	80	44	3	0	51	1.18

Tables:   1   2   3   4   5   6