genome.fa.s346.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168171.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_41, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  255648

Tables:   1   2   3   4   5   6   

This is table  4  of  6  ( 672 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
135308--135346	19	2.1	19	85	9	53	46	2	2	48	1.29
136088--136128	16	2.6	16	88	7	57	48	2	0	48	1.14
136768--136822	16	3.4	16	72	22	53	52	0	1	45	1.11
137018--137085	27	2.5	28	81	15	81	50	2	0	47	1.16
137044--137111	36	1.9	36	82	8	86	50	0	1	48	1.10
137777--137805	14	2.0	15	93	6	51	62	0	0	37	0.96
137846--137918	14	4.9	16	76	20	70	43	0	4	52	1.20
137887--137924	9	4.4	9	83	9	53	44	0	0	55	0.99
137841--137924	17	5.1	16	72	18	57	44	0	3	52	1.18
137953--137996	13	3.1	13	81	18	52	63	0	0	36	0.95
137964--138032	18	4.1	18	75	12	58	56	1	0	42	1.08
137953--138031	31	2.5	30	78	17	81	58	1	0	40	1.06
138043--138075	12	2.5	13	90	9	50	48	0	0	51	1.00
138738--138818	31	2.8	29	78	9	78	46	4	3	44	1.42
138726--138805	19	4.1	19	69	23	51	46	5	2	46	1.38
138957--138991	17	2.1	17	88	0	52	54	2	0	42	1.15
138952--139020	15	4.3	15	74	17	50	50	2	0	46	1.16
139628--139672	18	2.5	18	81	0	54	40	6	0	53	1.27
139989--140075	22	3.8	23	76	17	67	48	2	2	47	1.27
140018--140075	22	2.6	23	81	10	75	51	0	1	46	1.11
140746--140814	31	2.3	30	80	12	79	47	1	2	47	1.25
140824--140869	22	2.1	22	88	8	67	58	0	2	39	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
141672--141727	28	2.0	28	89	10	87	51	0	0	48	1.00
141869--141911	22	2.0	22	85	0	59	55	0	2	41	1.12
142101--142129	14	2.0	15	93	6	51	44	0	0	55	0.99
142104--142145	17	2.6	16	85	11	50	50	0	0	50	1.00
142299--142367	31	2.2	31	80	14	79	49	2	0	47	1.16
143018--143098	25	3.3	24	81	11	85	48	3	2	45	1.33
143413--143484	19	3.5	21	75	14	53	47	2	0	50	1.15
143434--143498	19	3.3	19	76	8	60	41	1	0	56	1.08
144080--145220	181	6.4	180	75	7	709	39	7	10	42	1.67
144501--145220	180	4.0	180	79	5	570	39	7	10	41	1.68
145607--147148	181	8.7	176	72	12	616	42	9	8	40	1.67
147252--147296	17	2.8	17	80	6	58	48	4	0	46	1.22
147668--147761	40	2.5	35	73	20	91	47	1	2	48	1.20
148037--148077	17	2.3	18	76	19	50	43	2	0	53	1.13
148175--148214	19	2.0	20	86	13	57	55	0	0	45	0.99
148139--148210	21	3.3	21	73	13	65	54	1	1	43	1.17
148175--148225	16	2.9	17	82	11	50	52	3	0	43	1.19
148134--148232	44	2.2	45	80	5	112	52	3	1	43	1.23
150095--150143	19	2.5	20	80	16	57	51	2	0	46	1.12
150113--150180	23	2.8	25	77	11	77	50	0	1	48	1.10
150280--150801	180	2.9	180	77	6	466	41	10	7	39	1.69
151018--151079	13	4.6	13	75	15	63	54	3	0	41	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
151046--151122	23	3.4	22	76	18	68	48	2	0	49	1.15
151069--151123	20	2.8	19	83	8	58	43	3	0	52	1.18
151143--151193	23	2.2	24	82	10	61	47	3	1	47	1.32
151163--151205	20	2.2	20	86	0	59	51	4	0	44	1.22
151493--151536	16	2.9	15	80	9	54	52	2	0	45	1.13
151645--151685	20	1.9	20	85	14	55	53	0	2	43	1.13
152371--152419	19	2.7	18	75	9	55	51	2	2	44	1.24
152406--152474	16	4.3	16	71	20	63	50	2	0	46	1.16
153693--153739	21	2.1	23	84	11	62	57	0	0	42	0.98
154106--154147	15	2.5	18	74	22	54	57	2	0	40	1.12
154116--154144	15	1.9	15	100	0	58	55	3	0	41	1.17
154132--154236	43	2.3	43	79	12	97	49	4	0	44	1.29
154220--154267	21	2.1	23	88	11	73	52	0	0	47	1.00
154230--154331	43	2.4	42	80	14	111	45	0	0	53	1.06
154280--154331	14	3.6	16	78	19	60	44	0	0	55	0.99
154379--154434	17	3.1	17	73	17	51	53	0	0	46	1.00
154385--154449	23	3.0	20	80	19	53	52	0	0	47	1.00
154223--154441	13	17.4	13	70	18	69	48	0	1	49	1.13
154400--154447	18	2.8	18	81	12	57	52	0	0	47	1.00
155154--155208	22	2.5	24	77	17	64	50	0	1	47	1.11
155152--155217	29	2.4	28	79	18	75	53	0	1	45	1.09
155241--156255	181	5.6	181	76	7	838	41	9	8	40	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
155311--156236	360	2.6	358	80	5	956	42	9	8	40	1.68
157200--159153	181	11.0	180	74	9	1326	41	9	8	40	1.67
159413--160433	181	5.7	177	72	11	566	41	9	8	40	1.68
164945--164998	21	2.4	23	78	6	67	51	1	0	46	1.11
164892--164981	31	3.0	30	71	23	82	46	2	1	50	1.21
165186--165229	21	2.1	21	91	0	70	43	2	9	45	1.48
165632--165672	21	2.0	21	85	9	57	51	0	7	41	1.30
168461--168526	21	3.4	18	70	25	55	51	3	1	43	1.26
168737--168795	29	2.0	30	84	15	79	50	3	6	38	1.45
168794--168834	22	2.0	22	85	9	59	46	7	4	41	1.53
168827--168874	25	1.9	25	83	8	62	50	4	0	45	1.21
169295--169353	13	4.5	13	75	12	50	50	0	3	45	1.18
169331--169370	21	2.0	20	85	14	55	50	0	2	47	1.14
169504--169592	16	5.6	16	68	20	53	47	2	1	49	1.21
169597--169656	29	2.0	31	83	6	79	53	5	1	40	1.33
169756--169862	16	6.4	16	73	18	76	49	1	0	47	1.18
169779--169866	20	4.6	19	69	23	60	47	1	1	50	1.16
169771--169866	26	3.8	25	68	21	74	48	1	1	48	1.15
169802--169879	21	3.4	22	69	28	56	48	0	1	50	1.09
170395--170463	20	3.3	20	76	20	61	42	2	1	53	1.24
170629--170669	18	2.2	19	86	4	57	43	7	0	48	1.30
170944--170997	10	4.8	11	81	16	58	42	1	0	55	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
170952--171011	19	3.2	18	76	19	59	43	1	0	55	1.10
170944--171011	25	2.9	24	83	14	72	44	1	0	54	1.09
170942--171012	23	3.3	21	80	19	85	45	1	0	53	1.09
171107--171138	10	3.1	11	82	17	50	53	0	0	46	1.00
171294--171334	11	3.6	11	83	6	55	53	0	2	43	1.13
171574--171654	16	5.7	15	71	20	50	48	1	1	49	1.17
172039--172127	10	8.9	10	70	15	60	40	3	1	55	1.24
172227--172271	19	2.3	20	84	3	65	44	0	0	55	0.99
172305--172382	19	4.0	20	80	6	70	53	0	2	43	1.14
172330--172380	23	2.5	20	78	12	50	52	0	3	43	1.19
172491--172545	25	2.2	26	83	9	69	49	0	1	49	1.11
172524--172580	17	2.9	19	72	17	55	54	1	0	43	1.10
173872--173927	18	3.0	19	75	17	55	44	0	1	53	1.11
174206--174402	25	8.0	25	70	18	87	49	0	0	49	1.08
174186--174415	14	16.4	14	67	21	65	49	0	0	49	1.07
174268--174429	6	26.5	6	66	23	63	49	0	1	48	1.13
174238--174310	31	2.3	32	79	13	80	52	0	0	47	1.00
174273--174317	17	2.6	17	85	0	63	51	0	0	48	1.00
174896--174950	24	2.4	22	77	11	56	47	5	1	45	1.36
175005--175055	23	2.2	23	86	6	68	52	0	1	45	1.12
175173--175231	26	2.3	26	82	11	59	47	1	6	44	1.39
176311--176348	17	2.3	17	86	4	51	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
176333--176413	32	2.5	34	76	13	89	49	1	1	48	1.17
176305--176405	49	2.1	47	82	10	116	49	1	0	47	1.19
176535--176593	21	3.0	21	69	16	54	47	0	0	52	1.00
176542--176603	21	2.9	21	69	13	54	48	0	0	51	1.00
177037--177068	15	2.1	15	94	0	55	56	0	0	43	0.99
177088--177136	23	2.1	23	85	7	64	53	2	2	42	1.24
177146--177258	15	7.7	15	73	15	60	47	0	1	50	1.11
177167--177228	20	3.2	19	80	15	65	45	0	1	53	1.10
177200--177257	20	2.8	20	78	2	62	50	0	3	46	1.18
177807--177836	12	2.6	12	94	5	53	53	0	0	46	1.00

Tables:   1   2   3   4   5   6