genome.fa.s346.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168171.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_41, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  255648

Tables:   1   2   3   4   5   6   

This is table  2  of  6  ( 672 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49692--49750	9	6.2	9	76	9	55	64	3	0	32	1.10
49702--49805	33	3.3	31	78	12	88	58	0	0	39	1.11
49705--49792	15	5.6	15	67	30	51	60	1	1	37	1.12
49767--49832	25	2.5	25	85	11	80	51	0	3	45	1.16
49767--49822	20	2.8	20	81	5	60	53	0	1	44	1.11
49705--49811	35	3.0	35	76	20	105	57	0	0	40	1.11
49788--49831	13	3.5	13	85	14	65	47	0	4	47	1.22
49767--49829	20	3.2	20	79	4	56	52	0	3	44	1.17
49788--49836	25	2.0	25	92	8	82	46	0	4	48	1.20
50059--50109	22	2.3	23	86	3	68	49	1	0	49	1.12
50369--50430	27	2.3	28	81	10	76	41	3	3	51	1.34
50889--50915	13	2.1	13	100	0	54	48	0	0	51	1.00
50884--51020	42	3.2	42	76	19	133	48	1	0	49	1.15
50915--51054	52	2.7	53	74	14	114	47	1	1	49	1.19
50908--51034	36	3.5	35	74	16	91	47	1	1	49	1.20
50886--51048	87	1.9	86	80	11	190	48	1	1	49	1.17
51181--51252	27	2.6	28	75	14	78	45	1	0	52	1.09
51186--51323	70	2.0	69	80	12	158	47	1	2	49	1.22
51682--51750	18	3.8	18	68	21	54	49	1	2	46	1.25
51743--51858	15	7.7	15	68	24	57	46	0	0	51	1.12
51764--51897	8	16.8	8	67	21	50	48	0	1	50	1.10
51716--51844	57	2.2	57	81	14	149	48	0	1	49	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51716--51846	28	4.5	29	72	16	103	48	0	1	49	1.16
51803--51890	20	4.3	20	78	12	90	48	0	1	50	1.08
51799--51898	30	3.4	29	80	13	98	49	0	1	50	1.07
51807--51898	15	6.2	15	77	16	77	48	0	1	50	1.08
52145--52236	24	4.0	21	72	17	58	52	5	2	40	1.37
52169--52236	24	2.7	25	75	11	68	50	4	1	44	1.31
52168--52236	16	4.3	15	76	10	57	49	4	1	44	1.31
52197--52221	13	1.9	13	100	0	50	52	8	0	40	1.31
52411--52440	12	2.6	12	94	5	53	53	0	0	46	1.00
52642--52692	21	2.4	22	81	12	63	52	0	3	43	1.19
52913--52949	15	2.5	15	95	4	67	51	0	0	48	1.00
52879--52944	34	1.9	34	81	6	80	48	0	1	50	1.10
53863--53896	9	3.8	9	88	11	52	41	0	0	58	0.98
54604--54692	40	2.2	40	79	11	94	53	0	0	46	1.00
54703--54745	20	2.0	22	86	8	63	46	0	2	51	1.13
55075--55101	14	1.9	14	100	0	54	55	0	7	37	1.28
55128--55201	36	2.1	34	85	14	98	50	2	5	41	1.39
55084--55233	79	1.9	79	81	13	184	51	3	3	42	1.35
55918--55971	27	2.0	28	85	3	74	46	0	9	44	1.35
56347--56393	23	2.0	23	84	8	60	38	2	0	59	1.09
56424--56504	34	2.4	35	82	13	91	41	1	4	51	1.31
56482--56527	16	2.8	15	84	15	56	50	0	2	47	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56944--56985	18	2.3	18	100	0	84	45	0	0	54	0.99
57931--58030	21	4.5	22	68	28	61	47	0	3	50	1.16
57946--58064	60	2.0	60	81	10	140	44	0	1	52	1.16
58682--58735	15	3.3	17	77	15	60	55	0	0	44	0.99
58806--58846	20	2.0	20	85	0	55	53	0	0	46	1.00
58957--59044	14	6.6	14	69	17	53	50	2	2	45	1.27
59268--59335	22	3.1	22	75	10	68	55	2	1	39	1.24
59299--59375	30	2.6	29	78	15	77	49	0	3	46	1.20
59879--59917	11	3.5	11	89	0	60	51	0	0	48	1.00
59919--59969	17	2.9	17	82	5	57	64	1	3	29	1.22
60440--60480	16	2.5	16	88	4	55	53	2	2	41	1.27
60575--60607	12	2.8	12	86	13	50	48	0	0	51	1.00
60869--60908	20	2.0	20	85	9	55	42	2	2	52	1.28
60981--61017	14	2.6	15	83	12	51	62	0	0	37	0.96
62469--62533	16	4.1	15	79	14	69	44	1	0	53	1.09
63692--63727	18	1.9	19	88	5	56	44	8	5	41	1.58
64809--64848	11	3.8	11	83	12	57	45	2	0	52	1.14
64884--64963	31	2.6	29	78	16	81	51	1	1	46	1.17
65122--65171	9	5.6	9	79	13	50	42	0	0	58	0.98
65256--65301	15	3.1	15	82	11	51	50	2	0	47	1.13
65271--65323	21	2.5	22	75	19	60	49	5	0	45	1.26
65469--65528	18	3.3	17	78	19	59	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65855--65899	17	2.6	17	82	6	56	48	0	2	48	1.13
65857--65947	29	3.4	28	77	16	86	48	2	3	46	1.31
65855--65907	6	9.0	6	78	17	58	49	0	3	47	1.19
65863--65950	25	3.5	25	73	19	76	46	2	3	47	1.31
66805--67309	180	2.8	178	79	4	476	42	9	7	40	1.66
67373--67408	16	2.1	17	90	10	56	38	11	5	44	1.63
67332--68643	181	7.3	180	77	5	1071	42	9	8	40	1.67
68486--68792	144	2.1	146	83	3	381	40	9	8	41	1.68
68937--70446	180	8.4	180	77	6	1248	39	9	9	41	1.71
68937--71050	361	6.0	360	77	9	1578	40	9	8	40	1.70
79095--79941	181	4.7	181	73	10	644	40	9	9	40	1.70
80683--80799	54	2.2	54	89	1	173	22	20	21	35	1.96
81786--81824	12	3.4	11	82	10	51	48	0	2	48	1.15
82782--82842	19	3.1	19	72	25	54	49	0	3	47	1.18
82995--83031	19	1.9	19	88	0	56	56	0	0	43	0.99
83304--83957	181	3.6	180	84	5	766	42	9	8	39	1.68
83893--84019	62	2.0	62	98	0	245	48	7	10	33	1.66
84206--85245	181	5.8	180	75	8	843	41	10	8	39	1.70
84207--85245	362	2.9	353	75	10	962	41	10	8	39	1.70
85703--85772	10	6.8	11	73	16	53	58	0	0	41	0.98
85749--85785	14	2.6	15	79	12	51	64	0	0	35	0.94
85815--85848	15	2.3	15	89	0	50	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86373--86434	30	2.0	31	84	9	83	46	6	1	45	1.38
86803--86889	13	6.8	13	70	14	56	45	1	0	52	1.08
86850--86899	16	3.1	16	82	2	55	50	0	0	50	1.00
86805--86902	19	4.9	19	68	19	58	47	1	0	51	1.07
86844--86902	23	2.5	22	80	17	66	49	0	0	50	1.00
88107--88202	49	2.0	48	82	10	115	47	4	1	46	1.28
88282--88321	10	3.9	11	87	12	50	52	2	0	45	1.14
88289--88331	14	3.1	14	83	10	52	55	0	0	44	0.99
88308--88340	17	1.9	17	88	11	50	60	0	0	39	0.97
89322--89372	19	2.8	18	80	11	52	60	1	0	37	1.08
89397--89445	10	5.2	10	79	20	61	61	0	2	36	1.08
89394--89456	23	2.9	23	75	24	73	60	0	1	38	1.07
89398--89437	19	2.2	19	95	4	73	62	0	2	35	1.09
89524--89548	10	2.5	10	100	0	50	48	8	0	44	1.32
90697--90761	19	3.4	19	71	23	55	50	1	1	46	1.20
90906--90997	24	3.8	24	76	8	80	47	1	3	47	1.25
91181--91238	17	3.1	18	78	9	55	50	1	3	44	1.29
91198--91238	21	1.9	21	85	14	57	51	0	4	43	1.23
91274--91331	26	2.3	25	76	5	64	43	0	5	51	1.24
91708--91749	12	3.2	13	76	10	50	61	2	0	35	1.09
92216--92294	31	2.5	33	78	15	87	45	2	0	51	1.14
92304--92356	17	3.1	17	79	12	56	54	1	0	43	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92306--92361	22	2.6	23	86	8	73	55	1	0	42	1.10
92366--92404	20	2.0	19	90	5	60	48	5	0	46	1.24
92505--92529	13	1.9	13	100	0	50	40	8	0	52	1.31
92555--92609	21	2.6	22	77	16	62	45	3	9	41	1.53
92546--92618	20	3.6	19	72	15	58	42	2	8	46	1.48
92947--92990	18	2.4	18	76	0	52	50	0	2	47	1.13
93081--93120	19	2.0	21	85	9	57	35	5	2	57	1.34
94435--94479	21	2.0	21	83	12	54	51	2	0	46	1.13
94536--94639	30	3.2	30	75	12	91	56	0	0	41	1.12
94538--94593	10	5.6	10	72	16	53	58	0	0	41	0.98

Tables:   1   2   3   4   5   6