genome.fa.s346.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168171.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_41, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  255648

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 672 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
231208--231258	15	3.4	16	81	10	63	49	5	0	45	1.26
231541--231590	21	2.3	22	89	3	75	42	2	0	56	1.11
231658--231737	15	5.4	14	72	20	56	43	3	2	50	1.33
232053--232086	17	1.9	17	88	5	50	50	5	2	41	1.42
232174--232238	22	2.7	22	86	11	76	47	3	3	46	1.33
232454--232516	31	2.0	33	84	12	87	42	1	1	53	1.19
233203--233290	6	15.5	6	72	23	59	47	0	2	50	1.13
233254--233307	28	2.0	25	83	16	65	51	0	1	46	1.11
233678--233719	22	1.9	22	85	9	59	42	0	0	57	0.99
233689--233773	25	3.5	24	72	16	77	48	1	1	49	1.16
234356--234402	9	5.7	9	78	21	50	55	0	2	42	1.12
235504--235546	13	3.1	14	87	9	54	44	0	2	53	1.13
235504--235546	7	6.3	7	87	12	54	44	0	2	53	1.13
235504--235546	20	2.1	21	86	4	61	44	0	2	53	1.13
236010--236167	26	6.1	26	65	21	82	49	1	2	46	1.26
236702--236814	28	4.0	27	70	18	70	44	3	0	51	1.25
236818--236883	24	2.8	24	73	13	66	48	0	3	48	1.17
237397--237471	29	2.6	27	78	15	80	54	0	1	44	1.08
237398--237464	19	3.5	19	70	17	59	53	0	1	44	1.09
238472--238504	14	2.3	15	89	5	50	42	0	0	57	0.98
238833--238893	11	5.5	11	75	13	54	45	3	0	50	1.17
238842--238893	5	9.6	5	76	15	50	46	1	0	51	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
238851--238893	16	2.8	16	85	3	61	46	0	0	53	1.00
239368--239474	17	6.2	17	66	25	64	45	0	0	54	0.99
239399--239423	13	1.9	13	100	0	50	52	0	0	48	1.00
239443--239491	17	2.9	18	79	14	59	44	0	0	55	0.99
239374--239490	22	5.4	22	70	21	70	46	0	0	53	1.00
240150--240196	21	2.2	22	85	11	62	46	4	0	48	1.21
240341--240382	19	2.2	20	91	4	68	47	0	4	47	1.23
240447--240511	14	4.7	13	75	17	51	47	3	3	46	1.33
240485--240517	15	2.1	16	88	5	50	48	6	0	45	1.27
240544--240569	11	2.4	11	100	0	52	34	0	7	57	1.27
240626--240680	24	2.3	23	90	3	83	49	1	1	47	1.23
240669--240709	21	1.9	22	85	5	57	43	0	2	53	1.13
241364--241395	16	1.9	17	93	6	57	43	0	12	43	1.42
242146--243718	181	8.8	179	73	9	1094	42	9	8	40	1.68
242145--243376	360	3.4	352	75	8	1031	42	9	7	40	1.66
243832--243863	15	2.1	15	94	0	55	43	6	0	50	1.27
243930--243955	12	2.2	12	100	0	52	42	0	0	57	0.98
244243--244350	28	3.8	27	70	21	69	48	1	1	48	1.23
244749--244788	19	2.0	20	86	13	57	55	0	0	45	0.99
245210--245259	18	2.8	18	82	8	59	46	0	2	52	1.12
245516--245550	16	2.1	17	89	5	54	54	2	2	40	1.30
245556--245627	15	4.7	15	75	17	51	41	1	5	51	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
245926--245970	22	2.0	23	83	12	58	48	11	11	28	1.73
246014--246128	30	3.9	28	75	18	83	48	0	1	48	1.17
246038--246151	31	3.7	32	76	18	93	47	1	2	48	1.26
246015--246151	29	4.6	29	75	17	95	47	1	2	48	1.22
246480--246546	23	2.8	24	78	13	59	52	0	2	44	1.16
246482--246592	37	3.0	35	71	16	82	48	0	1	48	1.18
246560--246612	27	1.9	27	84	3	70	45	0	1	52	1.11
246732--246767	19	1.9	19	88	5	56	50	2	0	47	1.15
246756--246846	23	4.0	23	77	15	91	46	0	2	51	1.13
246772--246822	16	3.1	16	75	24	52	41	0	1	56	1.10
246721--246823	20	5.5	19	69	26	76	44	0	0	53	1.13
247177--247582	181	2.2	180	81	3	467	42	9	8	39	1.67
248276--248308	16	2.1	16	88	5	50	75	0	0	24	0.80
248506--248878	183	2.0	181	79	3	399	40	10	8	40	1.70
249505--249610	20	5.3	20	68	26	64	48	1	2	47	1.27
249673--249727	22	2.5	24	77	17	64	50	0	1	47	1.11
249671--249736	29	2.4	28	79	18	75	53	0	1	45	1.09
249760--250508	181	4.2	178	76	9	615	41	10	8	39	1.70
251084--251132	18	2.7	19	69	12	50	53	0	2	44	1.12
251741--251789	9	5.8	9	77	18	52	51	2	0	46	1.12
251736--251788	15	3.3	16	82	17	65	49	1	0	49	1.12
251734--251816	18	4.6	18	77	14	82	50	2	0	46	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
252810--252840	15	2.0	16	93	6	55	38	0	0	61	0.96
252805--252857	8	6.4	8	80	10	54	41	0	0	58	0.98
253246--253286	19	2.2	19	86	0	55	48	4	0	46	1.23
253780--253846	22	3.1	22	80	14	70	49	4	2	43	1.38
254160--254235	26	3.0	25	76	16	68	44	1	2	51	1.23
254512--254560	19	2.7	18	75	9	55	51	2	2	44	1.24

Tables:   1   2   3   4   5   6

The End!